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Report for CCDS26796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26796.1 Public Mus musculus 13 Paip1 23 108 98 CCDS HistoryNCBI Gene:218693Re-query CCDS DB by CCDS ID:26796.1Re-query CCDS DB by GeneID:218693See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026520.13 ENSMUSP00000026520.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026520.13Link to Ensembl Protein Viewer:ENSMUSP00000026520.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026520Re-query CCDS DB by Protein ID:ENSMUSP00000026520
Original member NCBI NM_145457.4 NP_663432.1 Updated not alive Link to Nucleotide Sequence:NM_145457.4Link to Protein Sequence:NP_663432.1Re-query CCDS DB by Nucleotide ID:NM_145457Re-query CCDS DB by Protein ID:NP_663432
Current member NCBI NM_145457.5 NP_663432.1 Accepted alive Link to Nucleotide Sequence:NM_145457.5Link to Protein Sequence:NP_663432.1Re-query CCDS DB by Nucleotide ID:NM_145457Re-query CCDS DB by Protein ID:NP_663432Link to BLAST:NP_663432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663432.1 400 Q8VE62 400 100% 0 0

Chromosomal Locations for CCDS 26796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 119429133 119429160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119430160 119430329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119437969 119438154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119440759 119440871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119445737 119445848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119447715 119447840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119449904 119450010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119450696 119450813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119451792 119451846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119455696 119455789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119456988 119457081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGTCGGACAGTTTCGATCGGGCTCCAGAACAAACGAAGCCCCAGAGAGCTCCACCTAGTTCACAGGATA
AAATCCCACAGCAGAACTCGGAGTCAGCAATGGCTAAGCCCCAGGTGGTTGTGGCTCCTGTGTTAATGTC
TAAGCTGTCTGCGAACGCCCCCGAATTTTACCCATCAGGTTATTCTTCTAATTATACAGAATCCTATGAG
GATGGTTGTGAGGATTACCCGACTCTCTCAGAATACGTTCAGGATTTTCTGAATCATCTGACAGAACAGC
CTGGTAGTTTTGAAACAGAAATTGAACAGTTTGCAGAAACCCTGAATGGATGGGTCACAACAGATGATGC
TTTGCAAGAACTTGTGGAACTTATCTACCAACAGGCCACGTCTATCCCAAATTTCTCTTACATGGGAGCT
CGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGTCCACAGAGTGGCAACTTCCGCCAATTGCTAC
TTCAAAGGTGCAGGACGGAGTATGAAGCTAAAGACCAAGCTGCAAAAGGGGATGAAGTGACTCGAAAACG
ATTTCATGCATTTGTTCTGTTTCTGGGAGAACTATATCTTAACCTGGAGATTAAAGGAACAAATGGACAA
GTTACAAGAGCAGATATTCTTCAGGTTGGTCTTCGGGAACTGCTGAATGCTCTGTTTTCTAATCCTATGG
ATGACAACTTAATTTGTGCAGTAAAATTGCTAAAGTTGACAGGATCAGTTTTAGAAGATACTTGGAAGGA
AAAGGGGAAAACTGATATGGAAGAAATAATTCAGAGAATTGAAAATGTTGTCCTAGATGCAAACTGCAGC
AGAGATGTAAAACAGATGCTCTTGAAGCTTGTTGAACTTCGATCAAGTAACTGGGGTAGGGTCCATGCAA
CTTCAACATACAGAGAAGCTACCCCTGAAAATGACCCTAATTACTTCATGAATGAACCAACATTTTATAC
ATCTGATGGTGTTCCTTTCACTGCAGCGGACCCAGATTACCAAGAAAAGTATCAAGAGTTACTTGAAAGA
GAGGACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGACCCATATTTGGATG
ATATCGATGATGAGATGGACCCAGAAATTGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGCAA
GCGAAAACAGTAA

Translation (400 aa):
MSDSFDRAPEQTKPQRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSANAPEFYPSGYSSNYTESYE
DGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGWVTTDDALQELVELIYQQATSIPNFSYMGA
RLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEAKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQ
VTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDTWKEKGKTDMEEIIQRIENVVLDANCS
RDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLER
EDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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