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Report for CCDS26773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26773.1 Public Mus musculus 13 Il6st 23 108 98 CCDS HistoryNCBI Gene:16195Re-query CCDS DB by CCDS ID:26773.1Re-query CCDS DB by GeneID:16195See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070731.10 ENSMUSP00000064205.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070731.10Link to Ensembl Protein Viewer:ENSMUSP00000064205.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070731Re-query CCDS DB by Protein ID:ENSMUSP00000064205
Original member Current member EBI ENSMUST00000183663.7 ENSMUSP00000138836.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183663.7Link to Ensembl Protein Viewer:ENSMUSP00000138836.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183663Re-query CCDS DB by Protein ID:ENSMUSP00000138836
Original member Current member EBI ENSMUST00000184311.7 ENSMUSP00000139227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184311.7Link to Ensembl Protein Viewer:ENSMUSP00000139227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184311Re-query CCDS DB by Protein ID:ENSMUSP00000139227
Original member Current member NCBI NM_010560.3 NP_034690.3 Accepted alive Link to Nucleotide Sequence:NM_010560.3Link to Protein Sequence:NP_034690.3Re-query CCDS DB by Nucleotide ID:NM_010560Re-query CCDS DB by Protein ID:NP_034690Link to BLAST:NP_034690.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034690.3 917 Q00560 917 100% 0 0

Chromosomal Locations for CCDS 26773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112475046 112475109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112479985 112480290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112481424 112481544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112487709 112487869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112488504 112488658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112490483 112490642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112493589 112493671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112494579 112494789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112495190 112495372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112497285 112497386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112497722 112497868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112498749 112498889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112501113 112501209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112502791 112502872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112503705 112504445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGTCAGCACCAAGGATTTGGCTAGCGCAAGCTTTGCTTTTTTTCCTCACCACTGAATCTATAGGTCAAC
TTTTGGAACCGTGTGGTTACATCTACCCTGAATTTCCAGTTGTCCAGCGCGGCTCGAACTTCACTGCCAT
TTGTGTGCTGAAGGAGGCGTGTCTGCAGCATTACTACGTGAATGCCAGCTACATCGTGTGGAAGACCAAC
CATGCTGCTGTTCCCAGGGAGCAGGTCACTGTCATCAACAGAACCACGTCCAGTGTCACGTTCACAGACG
TGGTCCTCCCGAGCGTGCAGCTCACCTGCAACATCCTGTCCTTTGGGCAGATCGAGCAGAATGTGTATGG
AGTCACCATGCTTTCAGGCTTTCCTCCAGATAAACCTACAAATTTGACTTGCATTGTGAATGAGGGGAAG
AATATGCTGTGCCAGTGGGACCCCGGAAGGGAGACTTACCTTGAAACAAACTACACTTTGAAATCAGAGT
GGGCAACAGAGAAGTTTCCTGATTGCCAGTCAAAGCATGGCACTTCATGTATGGTCAGCTACATGCCCAC
CTATTATGTCAACATTGAAGTCTGGGTGGAAGCAGAGAATGCCCTTGGGAAGGTCTCCTCAGAGTCTATC
AATTTTGACCCCGTGGATAAAGTGAAACCCACCCCACCATATAATTTATCAGTGACCAACTCAGAAGAAT
TATCCAGTATATTAAAGCTATCATGGGTCAGTTCAGGGCTGGGCGGTCTTTTAGATCTAAAGTCTGACAT
CCAATATAGGACCAAAGATGCCTCAACTTGGATCCAGGTCCCTCTTGAAGATACAATGTCTCCTCGAACT
TCCTTCACTGTGCAGGACCTCAAGCCTTTTACAGAATATGTGTTTAGGATCCGGTCCATTAAGGACAGTG
GGAAGGGCTACTGGAGTGACTGGAGTGAGGAGGCTAGTGGGACCACATACGAAGACAGACCATCCAGACC
ACCAAGTTTCTGGTATAAGACAAATCCATCCCATGGGCAGGAATATAGATCTGTACGGCTCATATGGAAG
GCACTGCCTCTTTCTGAAGCCAATGGGAAAATCTTGGATTATGAAGTGATTCTTACGCAGTCAAAGTCCG
TCTCACAAACGTACACAGTCACTGGCACAGAGCTGACCGTGAATCTCACCAATGACCGCTATGTCGCGTC
TCTAGCAGCAAGAAACAAGGTGGGCAAATCAGCTGCAGCTGTCCTCACCATCCCCAGCCCCCACGTCACA
GCTGCTTATTCTGTAGTGAATCTTAAAGCATTTCCAAAAGATAACCTGCTCTGGGTGGAATGGACACCTC
CACCTAAACCCGTGAGCAAGTACATCTTAGAGTGGTGTGTGTTGTCAGAGAACGCACCCTGTGTTGAAGA
CTGGCAGCAGGAAGACGCTACCGTGAATCGGACCCACTTGAGAGGACGCCTCCTGGAGAGCAAGTGCTAT
CAAATCACAGTAACTCCCGTATTCGCCACGGGGCCCGGAGGCTCTGAGTCCTTGAAGGCGTACCTCAAAC
AAGCCGCTCCTGCCAGAGGACCGACTGTTCGGACAAAGAAAGTGGGGAAAAATGAAGCTGTCTTAGCGTG
GGACCAGATTCCTGTGGACGACCAGAATGGCTTCATTAGAAACTACTCCATATCTTACAGAACCAGCGTG
GGAAAGGAGATGGTTGTGCATGTGGATTCTTCTCACACGGAGTACACGCTGTCCTCTCTGAGTAGTGATA
CGTTGTACATGGTCCGAATGGCCGCGTACACAGATGAAGGTGGGAAAGATGGGCCGGAATTCACTTTTAC
AACACCAAAGTTCGCTCAAGGAGAAATAGAAGCCATAGTCGTGCCTGTGTGCTTAGCCTTCCTCCTGACA
ACCCTGCTGGGCGTCTTGTTCTGCTTTAACAAACGAGACCTAATTAAAAAACACATCTGGCCTAATGTTC
CTGATCCTTCCAAGAGTCATATTGCCCAGTGGTCACCTCACACCCCCCCAAGGCACAATTTTAACTCCAA
AGATCAAATGTACTCGGACGGCAATTTCACTGATGTAAGCGTTGTGGAAATAGAAGCAAACAACAAGAAG
CCTTGTCCAGATGACCTGAAGTCCGTGGACCTGTTCAAGAAGGAGAAAGTGAGTACAGAAGGGCACAGCA
GTGGCATCGGGGGCTCTTCATGCATGTCCTCCTCCAGGCCCAGCATCTCCAGCAACGAGGAGAATGAGTC
TGCTCAGAGCACCGCCAGCACGGTGCAGTACTCCACTGTGGTGCACAGCGGCTACAGGCACCAGGTCCCG
TCCGTGCAAGTGTTCTCAAGGTCCGAGTCCACCCAGCCCCTGCTAGACTCGGAGGAGCGGCCAGAAGACC
TGCAGCTGGTGGATAGTGTAGACGGTGGGGATGAGATCTTGCCCAGGCAACCGTATTTCAAGCAGAACTG
CAGTCAGCCTGAAGCCTGTCCAGAGATTTCACATTTTGAAAGGTCAAACCAGGTTTTGTCCGGCAATGAG
GAGGATTTTGTCAGACTGAAGCAGCAGCAGGTTTCAGATCACATTTCTCAGCCCTATGGATCCGAGCAAC
GGAGGCTGTTTCAGGAAGGCTCTACAGCGGATGCTCTTGGCACGGGGGCTGATGGACAGATGGAGAGATT
TGAATCTGTTGGAATGGAGACCACAATTGATGAAGAAATTCCCAAAAGTTACTTGCCACAGACTGTAAGA
CAAGGTGGCTACATGCCGCAGTGA

Translation (917 aa):
MSAPRIWLAQALLFFLTTESIGQLLEPCGYIYPEFPVVQRGSNFTAICVLKEACLQHYYVNASYIVWKTN
HAAVPREQVTVINRTTSSVTFTDVVLPSVQLTCNILSFGQIEQNVYGVTMLSGFPPDKPTNLTCIVNEGK
NMLCQWDPGRETYLETNYTLKSEWATEKFPDCQSKHGTSCMVSYMPTYYVNIEVWVEAENALGKVSSESI
NFDPVDKVKPTPPYNLSVTNSEELSSILKLSWVSSGLGGLLDLKSDIQYRTKDASTWIQVPLEDTMSPRT
SFTVQDLKPFTEYVFRIRSIKDSGKGYWSDWSEEASGTTYEDRPSRPPSFWYKTNPSHGQEYRSVRLIWK
ALPLSEANGKILDYEVILTQSKSVSQTYTVTGTELTVNLTNDRYVASLAARNKVGKSAAAVLTIPSPHVT
AAYSVVNLKAFPKDNLLWVEWTPPPKPVSKYILEWCVLSENAPCVEDWQQEDATVNRTHLRGRLLESKCY
QITVTPVFATGPGGSESLKAYLKQAAPARGPTVRTKKVGKNEAVLAWDQIPVDDQNGFIRNYSISYRTSV
GKEMVVHVDSSHTEYTLSSLSSDTLYMVRMAAYTDEGGKDGPEFTFTTPKFAQGEIEAIVVPVCLAFLLT
TLLGVLFCFNKRDLIKKHIWPNVPDPSKSHIAQWSPHTPPRHNFNSKDQMYSDGNFTDVSVVEIEANNKK
PCPDDLKSVDLFKKEKVSTEGHSSGIGGSSCMSSSRPSISSNEENESAQSTASTVQYSTVVHSGYRHQVP
SVQVFSRSESTQPLLDSEERPEDLQLVDSVDGGDEILPRQPYFKQNCSQPEACPEISHFERSNQVLSGNE
EDFVRLKQQQVSDHISQPYGSEQRRLFQEGSTADALGTGADGQMERFESVGMETTIDEEIPKSYLPQTVR
QGGYMPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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