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Report for CCDS26722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26722.1 Public Mus musculus 13 Mrps27 23 108 98 CCDS HistoryNCBI Gene:218506Re-query CCDS DB by CCDS ID:26722.1Re-query CCDS DB by GeneID:218506See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052249.6 ENSMUSP00000062326.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052249.6Link to Ensembl Protein Viewer:ENSMUSP00000062326.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052249Re-query CCDS DB by Protein ID:ENSMUSP00000062326
Original member Current member NCBI NM_173757.3 NP_776118.2 Accepted alive Link to Nucleotide Sequence:NM_173757.3Link to Protein Sequence:NP_776118.2Re-query CCDS DB by Nucleotide ID:NM_173757Re-query CCDS DB by Protein ID:NP_776118Link to BLAST:NP_776118.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776118.2 415 Q8BK72 415 100% 0 0

Chromosomal Locations for CCDS 26722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 99344803 99344875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99348332 99348409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99362965 99363035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99365225 99365283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99400262 99400376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99403504 99403582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99404988 99405103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99409809 99409911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99411278 99411420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99412195 99412365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99414739 99414978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGCGGCTCCCATGGTGCGGTGTGGGATGCTCCTGGCTCGGCGACTAGACGCGTCTCGCCTTTGCCTCG
CAGGTAAAAGATGCCTGCTTTCTGCAGCGTACGTGGACAGCCACCAGTGGGAAGCCAGAGAGAAGGAGGA
ATACCATCTGGCTGATCTTGCATCCTTAATGGACAAAGCGTATGAAAGAAAATTGCCTGTTAGTTCTTTA
TCAATATCACGGTTTGTGGACAACATTGCATCCCGAGAAGATCTAGATTCTGCAGAGTACTATCTTTACA
AATTTCGACACAGTCCCAACTGCTGGTACCTAAGAGACTGGACCATCCACAGCTGGATTAGACAGTGTCT
GAAATACGGAGCACAAGACAAAGCCTTGTATACACTTGTTAATAAGGTTCAGTATGGAATTTTTCCAGAT
AACTTTACATTCAACTTACTGATGGATTATTTCATAAAGAAAGGAAATTACAAAGATGCTTTATCCGTGG
TTTTTGAGATCATGATGCAAGAAGCCTTTGACGTGCCGTCCACCCAGTTTCTCTCCCTCTATGTTTTATA
CCGTTGCCTAGCAGAGAAGACGGAGCTCACATGGGAAGAAGAAAGAGACTTTGGGGCGTCCCTCTTGCTT
TCTGGCCTGAAACAAAGGAACACAGTGGGCCTGAGTTCCCAGCTGTATGGCTATGCACTTCTCGGGAAGG
TGGAACTGCAGCGTGGGGTGCGGGCTGTATACCACGGCATGCCTCTGATGTGGACACCAGGCTACCTCGA
CAGAGCCCTCCAAGTGATGGAGAGGGTGGCCTCCTCCCCTGAAGACCTCAAGCTGGGTAGAGAAGTGCTC
GATGTGCTGGATGGAGTCCTGAAGGTGGTGACGTCTCCAGATGTCCAGACTTCAGAGGCACAGCCTCAGG
AAGGTGAAGATGGCTTGGGCTCAGCAAACCTGGTGGAGCAGCTAGACACTGAGGAACCAGAACAGTCCAA
GCTTCCCCGATACCTCGAGCGCTTTCAGGCCTCTCGGTCTAAACTGCAGGAGCTGAACAGAGTTGAGTCT
GAAAGTCTTTTGACTCTGACCACCCAGCTTGTAAAAGAAAAACTCCCCGCCTGTGAGGCCGAGGACCTGG
CCACCTACGAGCAGAAACTCCGTGAGTGGCACCTGGAGCGGGTGCAGTTGATCCAGAGGGAGCAGGAACA
GAGGGAGAAGGCCAAGCAAGAGTACCAGGCGCTGAGTGCGGCAGAGAAAGCAGCCTGA

Translation (415 aa):
MAAPMVRCGMLLARRLDASRLCLAGKRCLLSAAYVDSHQWEAREKEEYHLADLASLMDKAYERKLPVSSL
SISRFVDNIASREDLDSAEYYLYKFRHSPNCWYLRDWTIHSWIRQCLKYGAQDKALYTLVNKVQYGIFPD
NFTFNLLMDYFIKKGNYKDALSVVFEIMMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLL
SGLKQRNTVGLSSQLYGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVL
DVLDGVLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQELNRVES
ESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEYQALSAAEKAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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