NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26708.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26708.2 Public Mus musculus 13 Gfm2 23 108 98 CCDS HistoryNCBI Gene:320806Re-query CCDS DB by CCDS ID:26708.2Re-query CCDS DB by GeneID:320806See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26708.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26708.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161639.7 ENSMUSP00000125656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161639.7Link to Ensembl Protein Viewer:ENSMUSP00000125656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161639Re-query CCDS DB by Protein ID:ENSMUSP00000125656
Original member Current member NCBI NM_001271463.1 NP_001258392.1 Accepted alive Link to Nucleotide Sequence:NM_001271463.1Link to Protein Sequence:NP_001258392.1Re-query CCDS DB by Nucleotide ID:NM_001271463Re-query CCDS DB by Protein ID:NP_001258392Link to BLAST:NP_001258392.1
Original member Current member NCBI NM_177266.5 NP_796240.3 Accepted alive Link to Nucleotide Sequence:NM_177266.5Link to Protein Sequence:NP_796240.3Re-query CCDS DB by Nucleotide ID:NM_177266Re-query CCDS DB by Protein ID:NP_796240Link to BLAST:NP_796240.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258392.1 779 Q8R2Q4-1 779 100% 0 0
NP_796240.3 779 Q8R2Q4-1 779 100% 0 0

Chromosomal Locations for CCDS 26708.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 97141948 97142010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97143008 97143092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97145647 97145704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97146220 97146317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97149309 97149434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97150325 97150413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97153228 97153316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97155190 97155250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97155421 97155600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97160087 97160167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97161019 97161167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97162852 97162992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97163075 97163174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97165011 97165197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97168266 97168342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97171486 97171624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97172512 97172691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97172940 97173055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97174862 97175044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97175600 97175737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGTTCACCAAATGGAGGATTTTTGCAGTGAATCATCAGAGAACGTTCAGTGTGCACCTTAATACCATGT
GTTACTGCAAAATAAAAGCAAATTTAAAAAGATTAAAGACTCAGCTGCCTCTTACAAGAAACTACAGTTC
TGCACCAGGCATAGCAGGAAGTGATGTCAAGTCTCTTCATTCCGTCATTAACCCTCCTGTGGCCAAAATT
CGTAATATTGGAATTATGGCACATATTGATGCAGGCAAAACCACCACCACAGAGAGAATCCTGTACTATT
CTGGATACACAAGATCATTGGGAGATGTCGATGATGGAGACACAGTGACGGATTTCATGGCTCAAGAGCG
AGAAAGGGGCATTACCATCCAGTCAGCAGCTGTGACTCTCGACTGGAAAGGGTATAGAGTCAATCTGATT
GATACTCCAGGTCACGTAGACTTCACTCTGGAGGTCGAGCGCTGCTTGAGGGTGTTGGACGGTGCGGTGG
CCGTGTTTGACGCCTCTGCTGGTGTAGAGGCCCAGACTCTCACTGTATGGAGGCAAGCTGACAAACACAA
AATACCCCGGATCTGCTTTTTAAACAAGATGGACAAGACTGGAGCAAGTTTTAACTATGCGGTTGAAAGC
ATCCGGGAGAAGTTAAAGGCAAAGCCCCTGATTTTACAGCTGCCAATTGGTGAAGCCAGAACTTTCCAAG
GAGTGGTGGATGTCGTAAACAAAGAAAAACTCCTTTGGAATTCTAACTCTGACGATGGAAAAGACTTCGA
GAGGATGCCCCTCTCAGAAGCGAGTGATCGGGAACTGCTAAAGGAGACAATTGAAGCAAGGAACTCCTTA
ATTGAACAAGTTGCAGACTTAGATGATGAGTTTGCTGACTTGGTTTTAGGTGAATTTAGTGAAAACTTTG
ATTTAGTACCAGCTGAAAAGTTACAGGCTGCAGTACACAGGGTGACACTGGCACAGGCTGCAGTGCCTGT
GCTGTGTGGGAGTGCCTTGAAGAACAAGGGCGTGCAGCCCCTGCTGGATGCGGTGACCACTTACCTGCCG
TCACCCGAGGAGCGCGAGGACCGCTTTCTGCAGTGGTATGAGGGTGACTTGTGTGCACTAGCGTTTAAAG
TACTACATGACAAACAGCGAGGACCCCTGGTTTTCCTGCGCATTTACTCGGGAACACTGACGCCTCAGCT
GGCTGTCCACAACATTAATAGAAACTGCACGGAAAGAATGAGTCGTCTGCTTTTGCCATTTGCTGACCAA
CATGTAGAAATCCCTTCCCTGACTGCTGGAAACATTGCTTTGACAGTTGGGCTTAAACAAACTGCCACTG
GAGACACCATAGTCTCGTCCAAGTCCAGCGCATTAGCTGCAGCTCGCAGAGCCGGACGAGGAGAAAGGGA
GCATGGAAAGAAGAGAGAGGCCGAGAGTCTGCTGTTGGCCGGGGTGGAGGTCCCAGAGCCTGTCTTCTTC
TGCACCATAGAGCCCCCGTCAGTCGCTAAGCAGCCAGATTTAGATCATGCCTTGGAACGCCTTCAGCGCG
AAGATCCCAGTTTGAAAGTGAAACTCGATCCTGACTCTGGACAAACTGTCCTGTGTGGAATGGGGGAGTT
GCATATTGAGATTATTCATGACCGTATCAAGAGGGAGTATGGCCTAGAGACCTATCTAGGGCCTCTGCAG
GTGGCATACCGGGAAACCATCTTAAACTCAGTTCGCGCCACAGACACCCTCGATAGGGTGCTTGGAGACA
AGCGGCACTTGGTGAGTGCGGAGCTGGAAGTCCGGCCAGCAGAAGAGCCCTGTGCTGTGGCCAAGATCGA
GTATGCTGACTGTGTGGGTGAAGACCTGCTGCAGGCCTCTCGGGAGGCCATTGAAAGTGCCGTCCACAGT
GCATGCCTCCAGGGACCTCTGCTCGGATCCCCAGTCCAGGATGTGGCAATGACGTTGCACTCACTGATGA
TTCACCCTGGCACCTCCACAACTATGGTCACTGCCTGCATCTCACGGTGTATGCAGAAGGCCCTGAAGAA
AGCTGACAAACAGGTGCTGGAACCTCTGATGAGTCTCGAGGTCACAGTGAGCAGGGAGTACCTCAGCCCT
GTCCTGGCAGACTTGGCACAAAGAAGAGGGAACATTCAGGAAATCCAGACTCGCCAAGACAACAGAGTTG
TTCTAGGATTCGTTCCTCTAGCAGAGATTATGGGATATTCAACTGTGCTTCGAACTCTGACATCTGGCTC
AGCTACTTTTGCCTTAGAACTGTCTACTTATCAAGCCATGAGTCCTCAAGACCAGAGTGCTCTACTCAAC
CAGAGAAGTGGCTTGGCCCATGTGCTATAG

Translation (779 aa):
MFTKWRIFAVNHQRTFSVHLNTMCYCKIKANLKRLKTQLPLTRNYSSAPGIAGSDVKSLHSVINPPVAKI
RNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTLDWKGYRVNLI
DTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHKIPRICFLNKMDKTGASFNYAVES
IREKLKAKPLILQLPIGEARTFQGVVDVVNKEKLLWNSNSDDGKDFERMPLSEASDRELLKETIEARNSL
IEQVADLDDEFADLVLGEFSENFDLVPAEKLQAAVHRVTLAQAAVPVLCGSALKNKGVQPLLDAVTTYLP
SPEEREDRFLQWYEGDLCALAFKVLHDKQRGPLVFLRIYSGTLTPQLAVHNINRNCTERMSRLLLPFADQ
HVEIPSLTAGNIALTVGLKQTATGDTIVSSKSSALAAARRAGRGEREHGKKREAESLLLAGVEVPEPVFF
CTIEPPSVAKQPDLDHALERLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYGLETYLGPLQ
VAYRETILNSVRATDTLDRVLGDKRHLVSAELEVRPAEEPCAVAKIEYADCVGEDLLQASREAIESAVHS
ACLQGPLLGSPVQDVAMTLHSLMIHPGTSTTMVTACISRCMQKALKKADKQVLEPLMSLEVTVSREYLSP
VLADLAQRRGNIQEIQTRQDNRVVLGFVPLAEIMGYSTVLRTLTSGSATFALELSTYQAMSPQDQSALLN
QRSGLAHVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH