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Report for CCDS26693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26693.1 Public Mus musculus 13 Ap3b1 23 108 98 CCDS HistoryNCBI Gene:11774Re-query CCDS DB by CCDS ID:26693.1Re-query CCDS DB by GeneID:11774See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022196.4 ENSMUSP00000022196.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022196.4Link to Ensembl Protein Viewer:ENSMUSP00000022196.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022196Re-query CCDS DB by Protein ID:ENSMUSP00000022196
Original member Current member NCBI NM_009680.3 NP_033810.2 Accepted alive Link to Nucleotide Sequence:NM_009680.3Link to Protein Sequence:NP_033810.2Re-query CCDS DB by Nucleotide ID:NM_009680Re-query CCDS DB by Protein ID:NP_033810Link to BLAST:NP_033810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033810.2 1105 Q9Z1T1 1105 100% 0 0

Chromosomal Locations for CCDS 26693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94359104 94359231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94390792 94390867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94394719 94394793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94403338 94403433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94403947 94404107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94408777 94408843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94417961 94418143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94440255 94440413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94443919 94444016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94445922 94445976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94446066 94446137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94448453 94448515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94450953 94451085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94455396 94455505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94462396 94462572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94471676 94471862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94472799 94472929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94476966 94477128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94479727 94479874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94483213 94483360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94493669 94493741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94501918 94502024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94528165 94528396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94531982 94532066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94542779 94542876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94547755 94547893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94565605 94565758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3318 nt):
ATGTCTAGCAACAGTTTCGCCTACAACGAGCAGTCGGGAGGAGGGGAGGCGGCGGAGCTCGGGCAGGAGG
CCACCTCGACCATCTCTCCCTCGGGCGCCTTCGGCCTCTTCAGCAGCGATTGGAAGAAGAATGAAGACCT
GAAGCAGATGCTGGAGAGCAACAAAGATTCTGCCAAGCTAGATGCTATGAAGCGAATTGTTGGGATGATT
GCGAAGGGGAAAAATGCCTCGGAACTCTTCCCTGCTGTTGTGAAGAATGTGGCCAGTAAAAACATCGAGA
TCAAGAAGTTGGTGTACGTTTACCTTGTCCGATATGCTGAAGAACAGCAGGACCTGGCTCTTCTGTCCAT
AAGCACTTTCCAGCGAGCTTTGAAGGACCCGAATCAACTAATCCGTGCAAGTGCCTTGAGAGTTTTGTCA
AGTATTAGAGTGCCAATTATCGTGCCTGTCATGATGCTGGCTATTAAGGAGGCTTCAGCTGACCTGTCGC
CATATGTTAGGAAGAATGCAGCCCATGCTATTCAGAAGCTGTACAGTCTTGACCCCGAGCAGAAGGAGAT
GTTAATTGAAGTCATTGAGAAGCTTCTGAAAGACAAGAGCACGCTGGTGGCTGGCAGTGTGGTGATGGCC
TTTGAAGAAGTGTGCCCGGATAGAATCGATCTGATTCACAGGAATTACCGAAAGCTTTGTAACCTGCTGG
TTGATGTTGAAGAGTGGGGGCAGGTGGTCATAATCCATATGCTAACAAGATACGCTCGGACCCAGTTTGT
CAGTCCTTGGAGAGAGGATGGTGGTCTGGAAGACAATGAGAAGAACTTCTATGAATCTGAGGAGGAGGAG
GAGGAGAAGGAGAAGAGCAGCAGGAAGAAGTCGTATGCCATGGACCCAGACCACAGACTCTTAATTAGAA
ACACCAAGCCGTTGCTTCAGAGCAGGAATGCAGCGGTGGTTATGGCTGTCGCTCAGCTATATTGGCACAT
CTCACCCAAGTCGGAGGCTGGTGTCATTTCTAAATCACTGGTGCGCTTATTGCGCAGCAATAGGGAGGTG
CAGTATATTGTATTGCAAAATATTGCAACTATGTCAATTGAGAGAAAGGGTATGTTTGAACCTTACCTGA
AGAGTTTCTATGTCAGATCCACTGATCCAACTATGATCAAAACACTGAAGCTTGAAATTTTGACAAACTT
GGCAAATGAAGCCAACATATCAACTCTTCTTCGAGAATTTCAGACCTACGTGAGAAGCCAGGACAAACAG
TTTGCAGCAGCCACTATTCAGACCATAGGCAGATGTGCAACCAGCATTAGCGAGGTCACCGACACATGCC
TCAACGGCCTGGTCTGCCTGCTGTCCAACAGGGATGAAATAGTTGTTGCTGAGAGTGTGGTTGTTATAAA
GAAATTGTTGCAAATGCAGCCTGCACAGCATGGTGAAATTATCAGACATATGGCCAAGCTCTTGGACAGT
ATCACTGTTCCTGTGGCTAGAGCAAGCATCCTTTGGCTAATTGGAGAAAACTGTGAACGAGTTCCTAAAA
TTGCTCCTGATGTTTTGAGGAAAATGGCTAAAAGTTTCACTAGTGAAGATGATCTCGTGAAACTGCAGAT
TTTAAATCTTGCAGCAAAATTGTATTTAACTAATTCCAAACAGACAAAATTGCTTACCCAGTACATATTA
AATCTCGGCAAGTATGATCAAAACTACGACATCAGAGACCGCACACGATTTATTAGGCAGCTTATTGTTC
CGAACGAGAAGAGTGGAGCCTTAAGTAAATATGCCAAAAAAATCTTCCTAGCACCGAAGCCTGCGCCACT
GCTCGAGTCTCCCTTTAAAGATAGGGATCGCTTCCAGCTTGGCACCTTATCTCATACTCTCAACATTAAA
GCGTCCGGGTACCTGGAATTATCTAATTGGCCAGAGGTGGCGCCTGACCCATCGGTTCGCAATGTAGAAG
TAATAGAGTCAGCAAAAGAATGGACCCCACTTGGGAAAACAAAGAAAGAAAAACCCATGAAGAAATTTTA
CTCTGAATCTGAGGAGGAGGAGGACGAGGACGAGGATGAGGACGAGGAGGAGGAAGAAAAGGAAGATGAG
GATGAGAACCCCTCTGATAGCAGCAGTGACAGTGAGAGCGGGTCCGGAAGTGAGAGTGGAGACACAGGCA
CCGAGGACAGCAGTGAGGACTCGTCCAGTGGACAAGACAGCGAGACCGGAAGCCAGGCAGAAGCGGAACG
CCAGAAGGTGGCCAAGAGGAACTCCAAAACCAAGAGGAAAAGTGATTCAGAAAATAGGGAGAAGAAAAAT
GAAAACTCAAAAGCTTCTGAATCGTCCAGTGAGGAGTCCAGTTCCATGGAAGACAGTTCTTCCGAGTCAG
AGTCAGAGTCAGGCTCTGACAGTGAGCCTGCGCCCAGAAACGTGGCTCCGGCAAAAGAAAGAAAACCCCA
GCAAGAAAGACATCCTCCCTCCAAAGATGTTTTCCTTCTAGATCTGGACGACTTTAACCCAGTATCCACC
CCAGTTGCCCTTCCTACACCAGCCCTTTCTCCAAGCTTGATAGCTGATCTTGAAGGTCTAAACTTGTCAA
CTTCTTCATCAGTCATCAACGTCAGTACGCCTGTCTTCGTGCCAACAAAAACACATGAGCTGCTTCACCG
AATGCATGGGAAAGGACTGGCCGCCCACTACTGCTTCCCAAGACAGCCCTGCATCTTCAGTGACAAGATG
GTCTCTGTACAGATCACCCTGACTAATACTTCTGATCGAAAAATAGAAAACATCCACATAGGGGGGAAAG
GGCTTCCTGTGGGCATGCAGATGCATGCCTTTCATCCAATAGACTCTCTGGAGCCTAAGGGGTCCGTGAC
TGTCTCAGTGGGTATTGACTTTTGTGATTCTACACAGACGGCCAGTTTCCAATTGTGCACCAAGGATGAC
TGCTTCAACGTCACCCTCCAGCCACCTGTTGGGGAGCTGCTTTCACCTGTGGCCATGTCAGAGAAGGACT
TTAAGAAGGAGCAAGGAACGCTCACTGGAATGAACGAGACTTCGGCTACACTCATCGCTGCTCCACAGAA
CTTCACTCCCTCCATGATCCTCCAGAAGGTTGTAAATGTGGCCAACCTCGGTGCTGTGCCTTCCAGCCAA
GATAACGTACACAGGTTTGCAGCTAGAACTGTGCACAGTGGGTCGCTGATGCTAGTCACAGTGGAACTGA
AGGAAGGCTCCACAGCCCAGCTTATCATCAACACCGAGAAAACCGTGATTGGTTCTGTTCTGCTGCGGGA
GCTGAAGCCTGTCCTGTCCCAGGGGTAA

Translation (1105 aa):
MSSNSFAYNEQSGGGEAAELGQEATSTISPSGAFGLFSSDWKKNEDLKQMLESNKDSAKLDAMKRIVGMI
AKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLS
SIRVPIIVPVMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIEVIEKLLKDKSTLVAGSVVMA
FEEVCPDRIDLIHRNYRKLCNLLVDVEEWGQVVIIHMLTRYARTQFVSPWREDGGLEDNEKNFYESEEEE
EEKEKSSRKKSYAMDPDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGVISKSLVRLLRSNREV
QYIVLQNIATMSIERKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVRSQDKQ
FAAATIQTIGRCATSISEVTDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEIIRHMAKLLDS
ITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSEDDLVKLQILNLAAKLYLTNSKQTKLLTQYIL
NLGKYDQNYDIRDRTRFIRQLIVPNEKSGALSKYAKKIFLAPKPAPLLESPFKDRDRFQLGTLSHTLNIK
ASGYLELSNWPEVAPDPSVRNVEVIESAKEWTPLGKTKKEKPMKKFYSESEEEEDEDEDEDEEEEEKEDE
DENPSDSSSDSESGSGSESGDTGTEDSSEDSSSGQDSETGSQAEAERQKVAKRNSKTKRKSDSENREKKN
ENSKASESSSEESSSMEDSSSESESESGSDSEPAPRNVAPAKERKPQQERHPPSKDVFLLDLDDFNPVST
PVALPTPALSPSLIADLEGLNLSTSSSVINVSTPVFVPTKTHELLHRMHGKGLAAHYCFPRQPCIFSDKM
VSVQITLTNTSDRKIENIHIGGKGLPVGMQMHAFHPIDSLEPKGSVTVSVGIDFCDSTQTASFQLCTKDD
CFNVTLQPPVGELLSPVAMSEKDFKKEQGTLTGMNETSATLIAAPQNFTPSMILQKVVNVANLGAVPSSQ
DNVHRFAARTVHSGSLMLVTVELKEGSTAQLIINTEKTVIGSVLLRELKPVLSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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