NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26561.1 Public Mus musculus 13 Slc25a48 23 108 98 CCDS HistoryNCBI Gene:328258Re-query CCDS DB by CCDS ID:26561.1Re-query CCDS DB by GeneID:328258See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021971.5 ENSMUSP00000021971.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021971.5Link to Ensembl Protein Viewer:ENSMUSP00000021971.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021971Re-query CCDS DB by Protein ID:ENSMUSP00000021971
Original member Current member NCBI NM_177809.4 NP_808477.2 Accepted alive Link to Nucleotide Sequence:NM_177809.4Link to Protein Sequence:NP_808477.2Re-query CCDS DB by Nucleotide ID:NM_177809Re-query CCDS DB by Protein ID:NP_808477Link to BLAST:NP_808477.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808477.2 306 Q8BW66 306 100% 0 0

Chromosomal Locations for CCDS 26561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 56438490 56438535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56442789 56442832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56448998 56449069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56451021 56451279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56463503 56463745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56464955 56465088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 56470350 56470472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGGCAGCTTCCAGCTGGAAGACTTTGTGGCAGGCTGGATCGGAGGTGTGGCCAGTGTCATTGTTGGGT
ACCCTCTGGACACAGTCAAGACTCGCCTGCAAGCTGGTGTCGGCTATGCGAACACATTCAACTGCATCCG
CATGGTGTACAAGAGGGAGCGTGTGTTTGGCTTCTTCAAGGGCATGTCCTTCCCCCTGGCCAGCATCGCC
ATCTATAACTCGGTGGTGTTCGGGGTCTTCAGCAACACCCAACGGTTCCTCAGCAAGTACCGCTGTGGGG
AACTCGAGGCTGGCCCTGGCCGAAGTCTGTCTGATCTGCTCCTGGCTAGCATGCTGACTGGTGTGGTCTC
TGTTGGGCTGGGCGGGCCCGTGGAACTCATCAAGATCCGACTGCAGATGCAAACACAGCCATTTCGGGAA
GCTAGCCATGGATTGAAGTCCAGGGCGGTGGCAGCATACCAGGGACCAGTGCACTGCATTGCAACCATTG
TGCAGATGGAGGGCCTGACAGGGCTGTACCGGGGAGCCAGCGCCATGCTGCTGAGAGACATCCCGGGATA
TTGCTTCTACTTTATTCCCTATGTGTTCCTGAGCGAGTGGATCACACCTGAGGCCTGCACAGGGCCCAGC
CCCTATGCAGCTTGGCTGGCAGGGGGCATTGCAGGGGCAATTTCCTGGGGGACAGCAACTCCAATGGATG
TCGTGAAAAGTCGAATCCAAGCAGATGGGGTCTATTTAAACAAATACAGAGGAGTCGTGGACTGCATCTC
CCAGAGTTACCAGCAAGAAGGCTTTAAGGTGTTTTTCAGGGGCATCACTGTGAATGCTGTGCGCGGCTTC
CCCATGAGTGCGGCCATGTTCCTCGGGTATGAGCTCTCACTGAAGGCGCTCCGGGGAGAGCACACTGTGA
GAAGCGAATGA

Translation (306 aa):
MGSFQLEDFVAGWIGGVASVIVGYPLDTVKTRLQAGVGYANTFNCIRMVYKRERVFGFFKGMSFPLASIA
IYNSVVFGVFSNTQRFLSKYRCGELEAGPGRSLSDLLLASMLTGVVSVGLGGPVELIKIRLQMQTQPFRE
ASHGLKSRAVAAYQGPVHCIATIVQMEGLTGLYRGASAMLLRDIPGYCFYFIPYVFLSEWITPEACTGPS
PYAAWLAGGIAGAISWGTATPMDVVKSRIQADGVYLNKYRGVVDCISQSYQQEGFKVFFRGITVNAVRGF
PMSAAMFLGYELSLKALRGEHTVRSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH