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Report for CCDS26534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26534.1 Public Mus musculus 13 Gprin1 23 108 98 CCDS HistoryNCBI Gene:26913Re-query CCDS DB by CCDS ID:26534.1Re-query CCDS DB by GeneID:26913See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099506.1 ENSMUSP00000097106.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099506.1Link to Ensembl Protein Viewer:ENSMUSP00000097106.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099506Re-query CCDS DB by Protein ID:ENSMUSP00000097106
Original member Current member EBI ENSMUST00000135343.1 ENSMUSP00000115539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135343.1Link to Ensembl Protein Viewer:ENSMUSP00000115539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135343Re-query CCDS DB by Protein ID:ENSMUSP00000115539
Original member NCBI NM_001316710.1 NP_001303639.1 Updated not alive Link to Nucleotide Sequence:NM_001316710.1Link to Protein Sequence:NP_001303639.1Re-query CCDS DB by Nucleotide ID:NM_001316710Re-query CCDS DB by Protein ID:NP_001303639
Current member NCBI NM_001316710.2 NP_001303639.1 Accepted alive Link to Nucleotide Sequence:NM_001316710.2Link to Protein Sequence:NP_001303639.1Re-query CCDS DB by Nucleotide ID:NM_001316710Re-query CCDS DB by Protein ID:NP_001303639Link to BLAST:NP_001303639.1
Original member NCBI NM_012014.4 NP_036144.2 Updated not alive Link to Nucleotide Sequence:NM_012014.4Link to Protein Sequence:NP_036144.2Re-query CCDS DB by Nucleotide ID:NM_012014Re-query CCDS DB by Protein ID:NP_036144
Current member NCBI NM_012014.5 NP_036144.2 Accepted alive Link to Nucleotide Sequence:NM_012014.5Link to Protein Sequence:NP_036144.2Re-query CCDS DB by Nucleotide ID:NM_012014Re-query CCDS DB by Protein ID:NP_036144Link to BLAST:NP_036144.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303639.1 932 Q3UNH4 932 100% 0 0
NP_036144.2 932 Q3UNH4 932 100% 0 0

Chromosomal Locations for CCDS 26534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54737661 54740459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGAGGGACTGCTGCTCCTCTCCAAAGGCCATCCCTGCACCCCCAAGGCACGCCCTGGACCAGAGTTTAG
GCATGGACCCCAGACACACCAGTTCCAGTGGGGCTGCGGAAGGGGCCTCCTGTTCTGAGAGGCCTGCTGG
GAGCTTAGCCTGCCCTTCTCCTAACTGCAGCCCTCTCCCAGAGACACCGAGGGCACATGGAGCCTTGACC
TCAGACAACTCTGGAACGACTTTGTTTGGGAAGCCAGAGCCCATGTCCTCAGCAGAAGCCACTCCCACAG
CCTCAGAGATCAGAAATCCTGTGTTCTCGGGGAAGATGGATGGCAACTCCCTGAAGCAGGCAGACTCCAC
TTCCACACGAAAGGAAGAGGCTGGGTCCTTGAGGAATGAAGAGTCCATGTTGAAGGGAAAGGCAGAGCCT
ATGATCTATGGAAAGGGGGAGCCTGGGACGGTAGGAAGAGTGGACTGCACAGCTTCAGGGGCGGAGAATT
CTGGGTCCTTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTGGATATAGTGTCCCCAGGAGGAGACAA
TGCTGGGTCTTTAAGAAAGGTAGAGACTATATCCTCAGGCAAAATGGATCCAAAAACAGAGAATGTCATG
CATTCCAGAAGAGAGCGCCCTGGATCCACAGGAGAGGGAGATCTTGTGTCTTTGAGGGAAAATGATATGA
AACCCCCGGACAACACAGATTCTGCCTCCACAAAAAAGACAGACCCTGAGTTCTCTGGAAAGCTAACTCC
AGGATCGTCAGGCAAGACAGAGCTTGTATCCTCAGTAACTGTGGCTCCTGTGACCTCTGAAAATGTGAAT
CCTGTATGCTCGGGGGGAGCAGGTCCTGCAGCTGTGGGCAATTCAGAAACTTTGTCCTCAGTCAAGAAGG
ACCCTCAGTTGCTTGGAAAGAAAGAGGCTGTCTCCTCAGGAGAAGGTGGGTCTGTATCGGTGAGAATGGC
AGAAACAGTGTCTGCCAGACAGCCAGAAGGTATGTTTCCAGCAAAGACAGATTCTACATCTTCCAACAGT
ACAGGACCTTCAGGCAGAGCGGACCCTGTTTCCTTAAGAAATTCAGAACTTGTGTCCCCAGTGAAACCAG
AACGCTTGTCCTCTGGGCAGGCAGAACGCGTGTCCTTGGTAAAAACAGAAACATTATCCTCAGGAAAAGA
AGATCCAAGGTCTTCTAGAAGGGTGGATCACACGACTGTCACAGGAAACATGCAAACATCTCAAAAGGGG
AATCCCGAGTCTTCAGGAAAGACAGACCTCGGGTCTTCGAGTTCAGGAGATACCAGGTCTCTGGGGACTT
GGGGGTCCCTGTCTGCTGCAAAAGCTGAGGTGACTGAGGGGAAAGGAGACCCACAGCCCTGGAAGAAGGC
AAGTCTCCCAGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAG
GCAGAAACGGTTTCCCCTGGAGAAGTGGACGCCATGACTTTAGGAAAAACGGTCCCAACGAGTTCAGGAA
AAACAGCTTTGGTATCCCCAGGGAAGGTGGATCTCATGACCTCAGAAAGAGCAGAAGGCATCCCAGAGCT
GCAGGCTTCAGAGAAAGGGAATCCTGTTAACTCCACACGGGTGGACACCGGGGCCACAGGGAGTACTGAG
CCCAAATCTGGGGTCAAAGTGATAACCCAGATTCCAGGTGCCACATCCCCGGGAAAGGTGGAAACTCCGT
CTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCCCTCCAGAAAAGTCGACCCCCCCACGAC
TGTGGAGCCTGTGTCCCTGGGGAAGGCTGACTCTGCATCTCCATCTCCTAGAAAAGCAGAGTCTCAGACT
TCCGCCAAGACTGTCCCTCAGGCCCCAGATAAGGCCACGTCCTCTCTCAGGCAATCAGATGGCACACCCT
ACAGCTCAGCCCAGCCCCAGAGAGATACCAGGAGCATCGGATCCCTGCCAGAGCGGGAGCCCTCTGCCAG
CACCAGCCAGAAAGACCTAGCGGCAGCGGCGGCTCAGAAGAGCCCCAGCGCGGAGGCTGCGGCGCCCCCT
CCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACGCG
AGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCATGTCTCCGCAGGA
CGGCGCGGGTGGCCCGGCCTTCAGCTTCCAGGCGGCGCCGCGCGCGCCCAGCCCCGCGCCCAGGCCACCA
TCGCGCCGGGACGCGGGCCTGCAGGTGTCGCTGGGAGCCGCCGAGACACGCTCGGTGGCCACGGGGCCCA
TGACTCCGCAGGCCGCAGCGCCGCCCGCCGTGCCGCCCGTCTTCCCCGAGGTGCGGGTGCGGCCAGGCTC
GGTGTTGGCGGCCGCCTTGGCGCCCCAGGAGGCGACCGAGCCGGTGCGCGACGTGAGCTGGGACGAGAAG
GGCATGACGTGGGAAGTGTACGGTGCTTCCATGGAGGTGGAGGTGCTGGGCATGGCCATCCAGAAGCATT
TGGAGCGTCAGATCGAGGAGCACGGCCGCCAAGGGGCGCCGGCGCCGGCGCCGCCGCCCGCCGTCCGCGC
GGGCCCAGGCCGTGCAGGCTCTGTGCGCACCGCACCGGCGGAGGGCGCCGCCAAGCGCCCGCCGGGCCTC
TTCCGCGCGCTGCTGCAGAGTGTGCGCCGGCCGCGGTGCTGCTCGCGGGCGGGCCCCACTGCGGAGTGA

Translation (932 aa):
MRDCCSSPKAIPAPPRHALDQSLGMDPRHTSSSGAAEGASCSERPAGSLACPSPNCSPLPETPRAHGALT
SDNSGTTLFGKPEPMSSAEATPTASEIRNPVFSGKMDGNSLKQADSTSTRKEEAGSLRNEESMLKGKAEP
MIYGKGEPGTVGRVDCTASGAENSGSLGKVDMPCSSKVDIVSPGGDNAGSLRKVETISSGKMDPKTENVM
HSRRERPGSTGEGDLVSLRENDMKPPDNTDSASTKKTDPEFSGKLTPGSSGKTELVSSVTVAPVTSENVN
PVCSGGAGPAAVGNSETLSSVKKDPQLLGKKEAVSSGEGGSVSVRMAETVSARQPEGMFPAKTDSTSSNS
TGPSGRADPVSLRNSELVSPVKPERLSSGQAERVSLVKTETLSSGKEDPRSSRRVDHTTVTGNMQTSQKG
NPESSGKTDLGSSSSGDTRSLGTWGSLSAAKAEVTEGKGDPQPWKKASLPASEKTDPLASSKAGSASQGK
AETVSPGEVDAMTLGKTVPTSSGKTALVSPGKVDLMTSERAEGIPELQASEKGNPVNSTRVDTGATGSTE
PKSGVKVITQIPGATSPGKVETPSLQKEQPQLSEKTDPSRKVDPPTTVEPVSLGKADSASPSPRKAESQT
SAKTVPQAPDKATSSLRQSDGTPYSSAQPQRDTRSIGSLPEREPSASTSQKDLAAAAAQKSPSAEAAAPP
PGPRTRDNFTKAPSWDAGAPPPREDAGTQAGAQACVSVAVSPMSPQDGAGGPAFSFQAAPRAPSPAPRPP
SRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAVPPVFPEVRVRPGSVLAAALAPQEATEPVRDVSWDEK
GMTWEVYGASMEVEVLGMAIQKHLERQIEEHGRQGAPAPAPPPAVRAGPGRAGSVRTAPAEGAAKRPPGL
FRALLQSVRRPRCCSRAGPTAE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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