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Report for CCDS26504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26504.1 Public Mus musculus 13 Omd 23 108 98 CCDS HistoryNCBI Gene:27047Re-query CCDS DB by CCDS ID:26504.1Re-query CCDS DB by GeneID:27047See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065494.7 ENSMUSP00000065706.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065494.7Link to Ensembl Protein Viewer:ENSMUSP00000065706.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065494Re-query CCDS DB by Protein ID:ENSMUSP00000065706
Original member Current member EBI ENSMUST00000221170.1 ENSMUSP00000152066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221170.1Link to Ensembl Protein Viewer:ENSMUSP00000152066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221170Re-query CCDS DB by Protein ID:ENSMUSP00000152066
Original member Current member NCBI NM_001360708.1 NP_001347637.1 Accepted alive Link to Nucleotide Sequence:NM_001360708.1Link to Protein Sequence:NP_001347637.1Re-query CCDS DB by Nucleotide ID:NM_001360708Re-query CCDS DB by Protein ID:NP_001347637Link to BLAST:NP_001347637.1
Original member Current member NCBI NM_012050.3 NP_036180.1 Accepted alive Link to Nucleotide Sequence:NM_012050.3Link to Protein Sequence:NP_036180.1Re-query CCDS DB by Nucleotide ID:NM_012050Re-query CCDS DB by Protein ID:NP_036180Link to BLAST:NP_036180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347637.1 423 O35103 423 100% 0 0
NP_036180.1 423 O35103 423 100% 0 0

Chromosomal Locations for CCDS 26504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49589476 49590415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49592056 49592387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGGCTTTTTAAGTCCAATATATGTCCTTTTCTTCTGTTTTGGAGTTAGAGTATACTGCCAATATGAAG
CTTACCGATGGGATGACGATTATGACCAAGAGCCAAATGAGGATTATGATCCAGAATTCCAATTTCATCA
AAATATTGAATATGGAGTTCCCTTTTATAATAATATTTTAGGTTGTGCTAAGGAATGCTTCTGTCCAACT
AACTTTCCAACATCAATGTACTGTGACAATCGTAAACTCAAGACTATCCCAATTATTCCAATGCACATTC
AGCAACTCAACCTTCAGTTCAATGACATTGAGGCTGTGACTGCAAATTCATTCATCAATGCAACTCATCT
TAAAGAAATTAACCTTAGCCACAACAAAATTAAATCTCAAAAGATTGATTATGGTGTATTCGCTAAACTT
TCAAATCTACAACAACTTCATCTAGAGCACAATAACCTAGAAGAATTTCCATTTCCACTTCCAAAATCTT
TGGAAAGACTCCTTCTTGGTTATAATGAAATCTCCATACTTCCAACAAATGCCATGGACGGGCTGGTGAA
TGTGACTATGCTTGACCTCTGCTATAATCATCTTTCTGATTCGATGTTAAAAGAAAAGACCCTTTCCAAA
ATGGAAAAATTAATGCAGCTCAACCTATGTAATAACAGATTAGAATCAATGCCCCTTGGATTGCCTTCAT
CACTTATGTATCTATCTTTAGAAAATAATTCAATTTCATCTATACCAGACAATTATTTTGACAAACTTCC
AAAACTTCATGCTCTAAGAATATCACACAACAAACTGGAAGACATTCCATATGACATCTTTAATCTTTCC
AATCTTATAGAACTCAACGTTGGACACAATAAATTGAAGCAAGCATTCTACATTCCAAGGAATTTGGAAC
ATCTATACCTACAAAATAATGAAATAGAAAGCATCAATGTGACAATGATATGTCCTTCTCCTGATCCAGT
ACACCATCACCATTTAACATACCTTCGTGTGGACCAAAATAAGCTGAAAGAACCAATAAGTTCATACATC
TTCTTCTGCTTCCCTCGTATACACAGTATTTATTATGGTGAGCAGAGGAGTACTAACGGTGAAACAATTC
AACTGAAGACCCAAGTTTTCAGGAGCTACCAAGAGGAGGAAGAGGAAGACGACCATGACAGTCAGGACAA
CACTCTTGAGGGTCAAGAAGTATCAGATGAGCACTATAATTCTCATTACTATGAGATGCAAGAGTGGCAA
GATACTATATAG

Translation (423 aa):
MGFLSPIYVLFFCFGVRVYCQYEAYRWDDDYDQEPNEDYDPEFQFHQNIEYGVPFYNNILGCAKECFCPT
NFPTSMYCDNRKLKTIPIIPMHIQQLNLQFNDIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKL
SNLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISILPTNAMDGLVNVTMLDLCYNHLSDSMLKEKTLSK
MEKLMQLNLCNNRLESMPLGLPSSLMYLSLENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLS
NLIELNVGHNKLKQAFYIPRNLEHLYLQNNEIESINVTMICPSPDPVHHHHLTYLRVDQNKLKEPISSYI
FFCFPRIHSIYYGEQRSTNGETIQLKTQVFRSYQEEEEEDDHDSQDNTLEGQEVSDEHYNSHYYEMQEWQ
DTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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