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Report for CCDS26501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26501.1 Public Mus musculus 13 Cenpp 23 108 98 CCDS HistoryNCBI Gene:66336Re-query CCDS DB by CCDS ID:26501.1Re-query CCDS DB by GeneID:66336See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021818.8 ENSMUSP00000021818.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021818.8Link to Ensembl Protein Viewer:ENSMUSP00000021818.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021818Re-query CCDS DB by Protein ID:ENSMUSP00000021818
Original member NCBI NM_025495.3 NP_079771.1 Updated not alive Link to Nucleotide Sequence:NM_025495.3Link to Protein Sequence:NP_079771.1Re-query CCDS DB by Nucleotide ID:NM_025495Re-query CCDS DB by Protein ID:NP_079771
Current member NCBI NM_025495.4 NP_079771.1 Accepted alive Link to Nucleotide Sequence:NM_025495.4Link to Protein Sequence:NP_079771.1Re-query CCDS DB by Nucleotide ID:NM_025495Re-query CCDS DB by Protein ID:NP_079771Link to BLAST:NP_079771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079771.1 286 Q9CZ92-1 286 100% 0 0

Chromosomal Locations for CCDS 26501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49464210 49464337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49464695 49464786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49465679 49465758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49627255 49627351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49641226 49641314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49647566 49647654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49650121 49650299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49652583 49652689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGATTCCGAGACCCGCGAACTGCGCGCCCTGGAGGCGGAGGTCGCAGCGCTGCAGCGAGAGTGCAGAA
TGCTGCAAAACGCTGGGGAGAAGGCGTCCGGAGCCTGGAAATCATTTCAAAAAATTTCCCAATCAGATTC
TGAGGAGTGGGAATCTTTGAAAGACTTGAGAAGTCAGCTTGAACATTTAAGATCTGAGCACTCATTTCTA
AGTAAACTTACTGGCTTCAATATAAGAAACTATTCCAAGATGGAAGACATTGTAAACACTGAAGAGACAG
AAAAAGATACAAAGAAAGTTCTACAGAAACACAGATTATCAGGAAATTGCAACATGGTGACATTTCAACT
GGAATTTGAGGTTCTGGAAATGGAGACTAAAGAGAAAAAATCTTCGATTATAACTGACCTCAGCATAATA
ATGGAGCCCACAGAATATTCAGAATTAAGTGAATTTGCATCTAGAGCAGAAGAAAAAAGAGATTTGCTCA
TGTTTTTCCGAAGTCTGCATTTTTTTGTGGAGTGGTGTGAATATCGTGAGAACACATTTAAGCATTTCAA
GGAGAAATACCCAGATACTGTATACCTCTTGGAGGGTACCTGTTCCCACTGCATGGAGATCCGCAGTACC
AGACAGCCAGGGTTTGAACTGGTGATTGTCTGGAAGATACAAATCGATGAGGAAGGGATGGTTTTTCCAA
AGCTGGATCTTCTCACCAAAGTCCCAGAGCGAGCCCTAGGACTGGACAAGAACAGAGTCATAGAAACTGC
TCCTCTCAGTTTCCGAAGCCTGCTAGGTGTACTTGGTATTGAAGCTGCTCTAGACAGCCTGATAAGATTG
TTCAGTGGAGATAACAACTAG

Translation (286 aa):
MDSETRELRALEAEVAALQRECRMLQNAGEKASGAWKSFQKISQSDSEEWESLKDLRSQLEHLRSEHSFL
SKLTGFNIRNYSKMEDIVNTEETEKDTKKVLQKHRLSGNCNMVTFQLEFEVLEMETKEKKSSIITDLSII
MEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWCEYRENTFKHFKEKYPDTVYLLEGTCSHCMEIRST
RQPGFELVIVWKIQIDEEGMVFPKLDLLTKVPERALGLDKNRVIETAPLSFRSLLGVLGIEAALDSLIRL
FSGDNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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