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Report for CCDS26474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26474.1 Public Mus musculus 13 Edn1 23 108 98 CCDS HistoryNCBI Gene:13614Re-query CCDS DB by CCDS ID:26474.1Re-query CCDS DB by GeneID:13614See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021796.8 ENSMUSP00000021796.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021796.8Link to Ensembl Protein Viewer:ENSMUSP00000021796.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021796Re-query CCDS DB by Protein ID:ENSMUSP00000021796
Original member Current member NCBI NM_010104.4 NP_034234.1 Accepted alive Link to Nucleotide Sequence:NM_010104.4Link to Protein Sequence:NP_034234.1Re-query CCDS DB by Nucleotide ID:NM_010104Re-query CCDS DB by Protein ID:NP_034234Link to BLAST:NP_034234.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034234.1 202 P22387 202 100% 0 0

Chromosomal Locations for CCDS 26474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 42301895 42301958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42303557 42303725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42304946 42305104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42305255 42305368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42306777 42306879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGATTATTTTCCCGTGATCTTCTCTCTGCTGTTCGTGACTTTCCAAGGAGCTCCAGAAACAGCTGTCT
TGGGAGCCGAACTCAGCACCGGAGCTGAGAATGGAGTGCAGAGCCCCCCTCCCAGCACACCCTGGAGACC
CCGCAGGTCCAAGCGCTGTTCCTGTTCTTCCTTGATGGACAAGGAGTGTGTCTACTTCTGCCACCTGGAC
ATCATCTGGGTCAACACTCCCGAGCGCGTCGTACCGTATGGACTGGGAGGTTCTTCCAGGTCCAAGCGTT
CCTTGAAAGACTTACTTCCCAATAAGGCCACAGACCAGGCAGTTAGATGTCAGTGCGCTCACCAAAAAGA
CAAGAAGTGCTGGAATTTCTGCCAAGCAGGAAAAGAACTCAGGGCCCAAAGTACCATGCAGAAAAGCTTA
AAAGACTCCAAGAAAGGAAAACCCTGTTCCAAGTTGGGAAAGAAGTGTATCTATCAGCAGCTGGTGGAAG
GAAGGAAACTACGAAGGTTGGAGGCCATCAGCAATAGCATCAAGGCATCTTTTCGTGTTGCAAAGTTGAA
AGCTGAGCTCTATAGAGACCAGAAGTTGACGCACAACCGAGCACATTGA

Translation (202 aa):
MDYFPVIFSLLFVTFQGAPETAVLGAELSTGAENGVQSPPPSTPWRPRRSKRCSCSSLMDKECVYFCHLD
IIWVNTPERVVPYGLGGSSRSKRSLKDLLPNKATDQAVRCQCAHQKDKKCWNFCQAGKELRAQSTMQKSL
KDSKKGKPCSKLGKKCIYQQLVEGRKLRRLEAISNSIKASFRVAKLKAELYRDQKLTHNRAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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