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Report for CCDS26449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26449.1 Public Mus musculus 13 Eci3 23 108 98 CCDS HistoryNCBI Gene:69123Re-query CCDS DB by CCDS ID:26449.1Re-query CCDS DB by GeneID:69123See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021853.11 ENSMUSP00000021853.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021853.11Link to Ensembl Protein Viewer:ENSMUSP00000021853.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021853Re-query CCDS DB by Protein ID:ENSMUSP00000021853
Original member NCBI NM_026947.4 NP_081223.1 Updated not alive Link to Nucleotide Sequence:NM_026947.4Link to Protein Sequence:NP_081223.1Re-query CCDS DB by Nucleotide ID:NM_026947Re-query CCDS DB by Protein ID:NP_081223
Current member NCBI NM_026947.5 NP_081223.1 Accepted alive Link to Nucleotide Sequence:NM_026947.5Link to Protein Sequence:NP_081223.1Re-query CCDS DB by Nucleotide ID:NM_026947Re-query CCDS DB by Protein ID:NP_081223Link to BLAST:NP_081223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081223.1 317 Q78JN3 317 100% 0 0

Chromosomal Locations for CCDS 26449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34946929 34947090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34948072 34948215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34948745 34948834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34952981 34953101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34954082 34954181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34956861 34956930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34959874 34960062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34960401 34960478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCCTAAGCCTGGTGTGTTTAACTTTGTCAACAAAGCCACGTGGGATGCAAGAAATGCCCTGGGCAGCC
TACCCAAGGAAACTGCCAGGAAGAACTATGTGGATCTCGTATCCAGTTTGAGTTCCTCATCTGAAGCCCC
GAGCCAGGGAAAGCGTGGAGCTGATGAGAAAGCCCGGGAGTCCAAAGACATCCTGGTAACTTCTGAAGAT
GGCATCACAAAGATCACGTTCAATCGGCCCACCAAAAAGAATGCCATATCCTTCCAGATGTATCTGGATA
TTATGCATGCACTTAAAAATGCCAGCACGGATAACTCAGTCATAACTGTTTTCACAGGAACTGGTGACTA
CTACAGCAGTGGGAATGACCTAAAAAACTTGATTAATGACGCTGGTGAAATACAGGACGTAGTAGCCACG
TCTACTAAGATACTGAGGGAATTTGTAAACTGTTTTATAGACTTTCCGAAGCCTCTGGTTGCAGTAGTAA
ATGGCCCAGCTGTGGGAATCGCTGTCACCATCCTGGCACTATTTGATGCTGTCTTTGCTTCGGACAGGGC
AACGTTTCATACTCCATTCAGCCAACTCAGCCAGATCCCGGAAGCATGCTCCACATACATGTTTCCAAAG
ATAATGGGCCCAACAAAGGCAGCTGAGATGCTTCTCTTTGGGAAGAAGCTCACAGCAAGAGAGGCCTGGG
CTCAAGGCCTTGTCACTGAAGTTTTCCCTGAGAGCACTTTTGAGACAGAAGTCTGGACCAGGCTGAAAAC
ATATTCGAAGCTCTCGCCAAACGTGATGAGAATTTCCAAAGAGTTAATCAGAAAACATGAGAAACAAAAG
CTATACACCGTGAATGCCGAAGAGTGCGCTGCAGCCCTGGAAAGGATGCCGAGAGAGGAGTATGCGAAGG
CACTCAGGAACTTCCTGTTCAGAAAGGCAAAGGCTAAGCTATGA

Translation (317 aa):
MPKPGVFNFVNKATWDARNALGSLPKETARKNYVDLVSSLSSSSEAPSQGKRGADEKARESKDILVTSED
GITKITFNRPTKKNAISFQMYLDIMHALKNASTDNSVITVFTGTGDYYSSGNDLKNLINDAGEIQDVVAT
STKILREFVNCFIDFPKPLVAVVNGPAVGIAVTILALFDAVFASDRATFHTPFSQLSQIPEACSTYMFPK
IMGPTKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRLKTYSKLSPNVMRISKELIRKHEKQK
LYTVNAEECAAALERMPREEYAKALRNFLFRKAKAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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