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Report for CCDS26448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26448.1 Public Mus musculus 13 Prpf4b 23 108 98 CCDS HistoryNCBI Gene:19134Re-query CCDS DB by CCDS ID:26448.1Re-query CCDS DB by GeneID:19134See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077853.4 ENSMUSP00000077019.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077853.4Link to Ensembl Protein Viewer:ENSMUSP00000077019.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077853Re-query CCDS DB by Protein ID:ENSMUSP00000077019
Original member Current member EBI ENSMUST00000222509.1 ENSMUSP00000152654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222509.1Link to Ensembl Protein Viewer:ENSMUSP00000152654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222509Re-query CCDS DB by Protein ID:ENSMUSP00000152654
Original member NCBI NM_013830.2 NP_038858.2 Updated not alive Link to Nucleotide Sequence:NM_013830.2Link to Protein Sequence:NP_038858.2Re-query CCDS DB by Nucleotide ID:NM_013830Re-query CCDS DB by Protein ID:NP_038858
Current member NCBI NM_013830.3 NP_038858.2 Accepted alive Link to Nucleotide Sequence:NM_013830.3Link to Protein Sequence:NP_038858.2Re-query CCDS DB by Nucleotide ID:NM_013830Re-query CCDS DB by Protein ID:NP_038858Link to BLAST:NP_038858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038858.2 1007 Q61136 1007 100% 0 0

Chromosomal Locations for CCDS 26448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34875654 34875694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34883231 34884427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34886670 34886843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34888124 34888279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34889512 34889593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34890495 34890705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34892090 34892163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34893761 34893851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34894435 34894582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34895319 34895456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34895967 34896120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34899109 34899223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34899831 34899982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34900364 34900450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34901393 34901596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3024 nt):
ATGGCCGCCACGGAGCCCCCGTCCCTGCGGGAGCAAGCTGAGATGGATGATGCTGATAATTCTGAAAAGA
GTGTAAATGAAGAAAATGGAGAGGTATCAGAAGACCAATCTCAAAATAAACACAGTCGTCACAAAAAAAA
GAAGCATAAACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGATAGGGATAAAAAACAC
AAACATAAGCATAAGCATAAGAAGCACAAACGGAAAGAAGTTATCGAGGCTTCCGACAAAGAAGGCCTGT
CCCCTGCAAAAAGAACTAAGCTTGATGATTTAGCTTTGCTGGAAGACTTGGAAAAGCAGAGAGCCTTGAT
TAAAGCTGAGCTTGATAATGAGTTAATGGAGGGGAAGGTCCAGTCTGGAATGGGGCTCATTTTGCAAGGC
TATGAGTCTGGCTCCGAAGAAGAAGGAGAGATTCACGAAAAGGCAAGAAATGGGAACAGGTCCAGTACCA
GGTCTTCCAGTACTCGGGGAAAACTTGAAATTACGGACAACAAAAATAGTGCAAAGAAACGAAGTAAGAG
CAGATCCAAAGAACGGACCAGGCACAGATCGGACAAAAGGAAAAGCAAGGGGGCTGGGGAAATGCTGAGA
GAGAAAGCAAACAGGAGCAAGTCCAAGGAGAGGAGAAAATCCAAAAGCCCATCCAAAAGAAGCAAGTCTC
AAGACCAAGCTAGAAAGTCAAAGTCCCCTCCACTCAGACGGCGGTCCCAAGAGAAAGTGGGGAAGGCCAG
ATCTCCTGCTGAGGAGAAGATGAAGAGTGAAGAGAAAGGCAAAATAAAGGATAGGAAAAAATCACCAATT
GTAAATGAAAGGAGTCGAGATAGATCTAAAAAATCCAAGTCCCCAGTTGACTTAAGAGATAAATCCAAAG
ACAGAAGGTCAAGGTCCAAAGAGCGGAAGTCAAAACGATCTGAAATTGACAAAGAAAAGAAGCCAATTAA
ATCACCTTCAAAGGATGCTTCTTCTGGGAAGGAAAATAGGTCACCCAGTAGAAGACCTGGCCGTAGTCCT
AAAAGAAGAAGTTTGTCTCCAAAACTGCGAGACAAGTCAAGAAGAAGTAGGTCTCCGCTTCTCAATGACA
GAAGATCTAAGCAGAGCAAATCGCCTTCTCGAACTCTGTCTCCAGGCAGAAGGGCCAAGAGCCGATCCTT
AGAAAGAAAACGGAGAGAACCAGAGAGGAGACGACTTTCTTCTCCGAGAACAAGACCTCGAGATGATATC
CTTGGTAGATGTGAACGGTCAAAAGATGCCAGCCCCATCAATAGGTGGTCTCCAACCCGAAGAAGAAGTA
GGTCTCCAATTAGAAGGAGGTCCCGTTCCCCATTGAGACGCAGCAGGTCTCCTAGAAGAAGAAGCAGGTC
TCCTCGGAGAAGAGATAGGAGCCGAAGGAGCAGGTCACGCTTGAGGAGAAGGTCTCGATCACGGGGTGGT
CATAGGAGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTCTCAGAAGGAATGAAAG
TTGAGCAAGAGTCTTCATCTGATGATAACCTTGAAGATTTTGATGTGGAGGAGGAAGATGAAGAGGCTCT
AATAGAACAGAGAAGAATACAGAGGCAAGCAATTGTGCAGAAATATAAATATCTTGCTGAAGATAGCAAT
ATATCTGTGCCATCTGAGCCAAGCAGCCCCCAGAGCAGCACAAGATCACGATCTCCTTCGCCAGACGACA
TCTTGGAGCGAGTTGCTGCTGATGTAAAAGAATATGAGCGGGAGAATGTTGACACCTTTGAGGCCTCAGT
AAAAGCCAAGCATAATCTAATGACAGTTGAACAGAATAATGGCTCATCTCAGAAGAAGATTTTGGCACCT
GACATGTTTACAGAATCTGATGACATGTTTGCTGCTTATTTTGATAGTGCTCGTCTCCGAGCTGCTGGCA
TTGGGAAAGATTTCAAAGAAAATCCCAACCTCAGAGATAATTGGACAGATGCAGAAGGCTATTACCGTGT
GAACATCGGGGAAGTCCTAGATAAACGTTATAATGTGTATGGCTACACTGGGCAGGGTGTGTTCAGCAAT
GTTGTGCGTGCCAGGGATAATGCGAGAGCCAACCAGGAAGTGGCTGTAAAGATCATCAGGAACAATGAAC
TCATGCAAAAGACTGGTTTAAAAGAGCTAGAATTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAA
GTTCCATTGCCTGCGCCTCTTCAGACACTTTTACCACAAACAGCACCTCTGTCTCGTCTTTGAACCTCTC
AGTATGAATTTGCGAGAGGTATTAAAAAAATATGGTAAGGATGTCGGTCTCCATATTAAGGCTGTACGAT
CGTACAGTCAGCAGTTGTTCCTGGCATTGAAACTCCTTAAAAGATGTAATATCTTACATGCAGATATCAA
ACCGGATAATATTCTGGTTAATGAATCCAAAACAATTTTAAAACTTTGTGATTTTGGATCGGCCTCACAT
GTTGCAGATAATGACATTACGCCTTATCTTGTCAGTAGATTTTATCGTGCTCCGGAGATCATTATAGGTA
AAAGCTATGACTACGGTATCGATATGTGGTCTGTAGGTTGTACCTTATATGAACTCTACACTGGAAAAAT
CTTATTCCCTGGCAAAACTAATAACCATATGTTGAAGCTCGCCATGGACCTTAAAGGAAAAATGCCAAAT
AAGATGATCCGGAAAGGTGTATTCAAAGATCAACATTTTGACCAAAATCTGAACTTCATGTACATAGAGG
TTGATAAAGTGACAGAGAGGGAGAAAGTTACTGTCATGAGCACCATTAATCCAACTAAGGACCTGTTGGC
TGACTTGATTGGGTGCCAGCGACTTCCTGAAGATCAACGTAAAAAAGTACACCAGCTAAAGGACTTGTTG
GACCAGATCCTAATGTTGGACCCAGCTAAGCGAATTAGCATCAACCAGGCCCTGCAGCATGCATTCATCC
AGGAAAAAATTTAA

Translation (1007 aa):
MAATEPPSLREQAEMDDADNSEKSVNEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSSEEDRDKKH
KHKHKHKKHKRKEVIEASDKEGLSPAKRTKLDDLALLEDLEKQRALIKAELDNELMEGKVQSGMGLILQG
YESGSEEEGEIHEKARNGNRSSTRSSSTRGKLEITDNKNSAKKRSKSRSKERTRHRSDKRKSKGAGEMLR
EKANRSKSKERRKSKSPSKRSKSQDQARKSKSPPLRRRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPI
VNERSRDRSKKSKSPVDLRDKSKDRRSRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSP
KRRSLSPKLRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDI
LGRCERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRSRRSRSRLRRRSRSRGG
HRRRSRSKVKEDKFKGSLSEGMKVEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQAIVQKYKYLAEDSN
ISVPSEPSSPQSSTRSRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSSQKKILAP
DMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSN
VVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPL
SMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASH
VADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPN
KMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLL
DQILMLDPAKRISINQALQHAFIQEKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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