NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26442.1 Public Mus musculus 13 Nqo2 23 108 98 CCDS HistoryNCBI Gene:18105Re-query CCDS DB by CCDS ID:26442.1Re-query CCDS DB by GeneID:18105See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021843.12 ENSMUSP00000021843.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021843.12Link to Ensembl Protein Viewer:ENSMUSP00000021843.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021843Re-query CCDS DB by Protein ID:ENSMUSP00000021843
Original member Current member EBI ENSMUST00000058978.8 ENSMUSP00000053809.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058978.8Link to Ensembl Protein Viewer:ENSMUSP00000053809.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058978Re-query CCDS DB by Protein ID:ENSMUSP00000053809
Original member Current member EBI ENSMUST00000222740.1 ENSMUSP00000152294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222740.1Link to Ensembl Protein Viewer:ENSMUSP00000152294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222740Re-query CCDS DB by Protein ID:ENSMUSP00000152294
Original member NCBI NM_001163241.1 NP_001156713.1 Updated not alive Link to Nucleotide Sequence:NM_001163241.1Link to Protein Sequence:NP_001156713.1Re-query CCDS DB by Nucleotide ID:NM_001163241Re-query CCDS DB by Protein ID:NP_001156713
Current member NCBI NM_001163241.2 NP_001156713.1 Accepted alive Link to Nucleotide Sequence:NM_001163241.2Link to Protein Sequence:NP_001156713.1Re-query CCDS DB by Nucleotide ID:NM_001163241Re-query CCDS DB by Protein ID:NP_001156713Link to BLAST:NP_001156713.1
Original member NCBI NM_001163242.1 NP_001156714.1 Updated not alive Link to Nucleotide Sequence:NM_001163242.1Link to Protein Sequence:NP_001156714.1Re-query CCDS DB by Nucleotide ID:NM_001163242Re-query CCDS DB by Protein ID:NP_001156714
Current member NCBI NM_001163242.2 NP_001156714.1 Accepted alive Link to Nucleotide Sequence:NM_001163242.2Link to Protein Sequence:NP_001156714.1Re-query CCDS DB by Nucleotide ID:NM_001163242Re-query CCDS DB by Protein ID:NP_001156714Link to BLAST:NP_001156714.1
Original member NCBI NM_020282.3 NP_064678.1 Updated not alive Link to Nucleotide Sequence:NM_020282.3Link to Protein Sequence:NP_064678.1Re-query CCDS DB by Nucleotide ID:NM_020282Re-query CCDS DB by Protein ID:NP_064678
Current member NCBI NM_020282.4 NP_064678.1 Accepted alive Link to Nucleotide Sequence:NM_020282.4Link to Protein Sequence:NP_064678.1Re-query CCDS DB by Nucleotide ID:NM_020282Re-query CCDS DB by Protein ID:NP_064678Link to BLAST:NP_064678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156713.1 231 Q9JI75 231 100% 0 0
NP_001156714.1 231 Q9JI75 231 100% 0 0
NP_064678.1 231 Q9JI75 231 100% 0 0

Chromosomal Locations for CCDS 26442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 33968271 33968277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33972312 33972476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33979532 33979662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33981425 33981538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33982448 33982549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33985316 33985492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGCAGGTAAGAAAGTGCTCATCGTCTATGCACACCAAGAACCCAAGTCCTTCAATGGGTCCCTGAAGA
AAGTGGCTGTTGAAGAACTGAGCAAGCAGGGATGCACAGTCACTGTGTCTGATTTATATAGCATGAACTT
TGAGCCAAGGGCCACAAGAAATGATATCACTGGTGCCCCCTCTAATCCTGACGTCTTCAGTTATGGGATA
GAAACCCATGAAGCCTACAAGAAGAAAGCTCTGACCAGTGATATATTTGAAGAACAGAGAAAGGTGCAAG
AAGCTGATCTTGTGATATTTCAGTTTCCACTATACTGGTTCAGCGTTCCAGCAATCCTAAAAGGTTGGAT
GGATAGGGTGCTGTGCCGAGGGTTTGCCTTTGATATCCCAGGCTTTTATGACTCTGGTTTTCTCAAGGGT
AAATTAGCTCTCCTTTCCTTAACCACGGGAGGTACAGCGGAGATGTACACAAAAGATGGGGTCAGTGGAG
ATTTCCGGTACTTCCTGTGGCCACTTCAGCATGGTACACTGCACTTCTGTGGATTTAAAGTCCTTGCCCC
CCAGATCAGTTTTGGTCTTGATGTTTCATCAGAAGAAGAAAGGAAAGTGATGCTGGCATCATGGGCCCAG
CGGCTGAAGAGCATCTGGAAGGAAGAACCCATCCACTGCACACCCCCTTGGTACTTCCAAGAGTAA

Translation (231 aa):
MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAPSNPDVFSYGI
ETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRVLCRGFAFDIPGFYDSGFLKG
KLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFCGFKVLAPQISFGLDVSSEEERKVMLASWAQ
RLKSIWKEEPIHCTPPWYFQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH