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Report for CCDS26413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26413.1 Public Mus musculus 13 E2f3 23 108 98 CCDS HistoryNCBI Gene:13557Re-query CCDS DB by CCDS ID:26413.1Re-query CCDS DB by GeneID:13557See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102948.10 ENSMUSP00000100012.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102948.10Link to Ensembl Protein Viewer:ENSMUSP00000100012.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102948Re-query CCDS DB by Protein ID:ENSMUSP00000100012
Original member Current member NCBI NM_010093.3 NP_034223.1 Accepted alive Link to Nucleotide Sequence:NM_010093.3Link to Protein Sequence:NP_034223.1Re-query CCDS DB by Nucleotide ID:NM_010093Re-query CCDS DB by Protein ID:NP_034223Link to BLAST:NP_034223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034223.1 457 O35261 457 100% 0 0

Chromosomal Locations for CCDS 26413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 29909903 29910165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29911193 29911328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29913404 29913518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29916846 29917004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29918576 29918795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29920114 29920225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29985300 29985668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGAGAAAGGGGATCCAGCCCGCCCTGGAGCAGTACCTGGTGACCGCCGGGGGTGGGGAGGGGGCGGCTG
TCGTCGCCGCCGCCGCTGCAGCCTCCATGGACAAAAGGGCACTGCTAGCCAGCCCCGGCTTCGCCGCCGC
CGCCGCCCCGGGCACGTACATCCAGATCCTCACTACGAACCCTTCCACCACGTCCTGTGCCACCTCCCTC
CAAAGTGGCGCCCTGACCGCCGGCCCCCTTCTCCCCAGTGTCCCCGGCACGGAGCCGGCCGCCAGCAGCC
TCTACACCACGCCACAAGGACCCTCCAGCAGAGTCGGGCTGCTGCAGCAGCCACCAGCACCAGGACGCGG
CGGCGGCGGTGGCCCACCGGCAAAGCGAAGGCTGGAACTGGGCGAGAGTGGCCATCAGTACCTCTCAGAT
GGTCTAAAGACCCCCAAGGGCAAAGGAAGAGCTGCACTACGGAGTCCCGATAGTCCAAAAACTCCAAAAT
CTCCCTCAGAAAAAACGCGGTATGATACGTCCCTCGGTCTGCTCACCAAGAAGTTCATTCAGCTCCTGAG
CCAGTCTCCTGATGGGGTCCTGGATCTGAACAAGGCAGCAGAGGTGCTCAAGGTGCAGAAGAGGAGGATT
TACGACATCACCAACGTGCTGGAAGGCATCCACCTCATTAAGAAGAAGTCTAAGAACAACGTCCAGTGGA
TGGGCTGCAGTCTGTCTGAGGATGGGGGCATGCTGGCCCAGTGTCAAGGCCTGTCCAAAGAAGTGACTGA
GCTCAGTCAGGAAGAGAAGAAATTAGATGAGCTGATCCAAAGCTGTACCCTGGACCTCAAACTGTTAACC
GAGGATTCAGAGAATCAAAGGTTAGCTTATGTTACATATCAAGATATTCGAAAAATTAGTGGCCTTAAAG
ACCAAACTGTTATAGTTGTGAAAGCCCCTCCAGAAACGAGACTTGAAGTGCCTGACTCAATAGAGAGCCT
ACAAATCCATTTGGCAAGTACCCAAGGGCCCATTGAGGTTTACTTGTGTCCAGAAGAGACGGAAACACAC
AGACCCATGAAAACAAATAACCAAGACCACAATGGGAATATCCCCAAGCCCACTTCCAAAGACTTGGCTT
CTAACAACTCAGGACATAGTGACTGCTCGGTTTCTACAGCAAACCTCTCTCCTCTGGCCTCCCCAGCCAA
CCTTTTACAGCAGACTGAGGACCAAATCCCGTCCAACCTTGAAGGACCTTTTGTGAACTTACTGCCTCCC
CTGCTCCAAGAGGACTACCTGCTGAGCCTGGGGGAGGAAGAGGGCATCAGTGACCTCTTCGATGCCTATG
ATTTGGAAAAGCTGCCTCTGGTGGAGGACTTCATGTGTAGTTGA

Translation (457 aa):
MRKGIQPALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAPGTYIQILTTNPSTTSCATSL
QSGALTAGPLLPSVPGTEPAASSLYTTPQGPSSRVGLLQQPPAPGRGGGGGPPAKRRLELGESGHQYLSD
GLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRI
YDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLT
EDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETH
RPMKTNNQDHNGNIPKPTSKDLASNNSGHSDCSVSTANLSPLASPANLLQQTEDQIPSNLEGPFVNLLPP
LLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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