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Report for CCDS26401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26401.1 Public Mus musculus 13 Prl8a1 23 108 98 CCDS HistoryNCBI Gene:73244Re-query CCDS DB by CCDS ID:26401.1Re-query CCDS DB by GeneID:73244See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006664.7 ENSMUSP00000006664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006664.7Link to Ensembl Protein Viewer:ENSMUSP00000006664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000006664Re-query CCDS DB by Protein ID:ENSMUSP00000006664
Original member Current member NCBI NM_028477.2 NP_082753.1 Accepted alive Link to Nucleotide Sequence:NM_028477.2Link to Protein Sequence:NP_082753.1Re-query CCDS DB by Nucleotide ID:NM_028477Re-query CCDS DB by Protein ID:NP_082753Link to BLAST:NP_082753.1

Chromosomal Locations for CCDS 26401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27574002 27574190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27575519 27575698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27576894 27577001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27578623 27578661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27579636 27579811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27582080 27582110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGTGCTGCCATTAATTCAACCCCACTTCTGCACATTCCTACTGTTGGTGGTTTCAAACCTGCTCCTGT
GGGAGAAAACTGCATCAATTTCTGCATGTCACACAGATGAGGAAGGCTGCATGAAACCCCTTGTAGAAAC
ATTTAACAATGCCATCCAGAGAGCTGAAATCATCCTTAATGTTTCTGAGCAAATGCATCAAGAGTTTCTC
CACAATGAGTTCTCTTCCAGACACTTCACACACTTTAACTCACAACTGATTAGGCAGGATCAGCTTGTTC
TCAGAGCCAGAACTTACTGCCACTCTACTATCACAAACCCTTCAAATATTGGACCTGAATACAAAAATAT
AAAAACCAAAAAGTACTTAAAAATGTTGATCAATTTTGTGGGTGCTTGGATCAGCCCACTGTACCATCTA
GTGATTGAACTGAGTGCCATGAATGATGTCCCTGAAAGTATCCTCTCAAAAGCCAATGAGATTGAAGAGA
ACAACAGGGAGCTCCTGAATGACCTTAGGTGGATACTCACCAAGGTTTATCCTACAGCGAAGATGAAGAA
ATTATTTCCTACCTGGGAACATCTTCCATCCATAAAATCAACTGACAAAAATTACCAATTTTTGGCAATA
TTTAACCTTTCCCATTGCCTTCGTGTGGATATATTCTACACTAAATTTCATCTCAGAACATTGAAATGTC
GCATAACTGGGAAAGATTGCTAA

Translation (240 aa):
MVLPLIQPHFCTFLLLVVSNLLLWEKTASISACHTDEEGCMKPLVETFNNAIQRAEIILNVSEQMHQEFL
HNEFSSRHFTHFNSQLIRQDQLVLRARTYCHSTITNPSNIGPEYKNIKTKKYLKMLINFVGAWISPLYHL
VIELSAMNDVPESILSKANEIEENNRELLNDLRWILTKVYPTAKMKKLFPTWEHLPSIKSTDKNYQFLAI
FNLSHCLRVDIFYTKFHLRTLKCRITGKDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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