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Report for CCDS26276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26276.1 Public Mus musculus 13 Nkapl 23 108 98 CCDS HistoryNCBI Gene:66707Re-query CCDS DB by CCDS ID:26276.1Re-query CCDS DB by GeneID:66707See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068235.5 ENSMUSP00000065168.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068235.5Link to Ensembl Protein Viewer:ENSMUSP00000065168.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068235Re-query CCDS DB by Protein ID:ENSMUSP00000065168
Original member Current member NCBI NM_025719.3 NP_079995.2 Accepted alive Link to Nucleotide Sequence:NM_025719.3Link to Protein Sequence:NP_079995.2Re-query CCDS DB by Nucleotide ID:NM_025719Re-query CCDS DB by Protein ID:NP_079995Link to BLAST:NP_079995.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079995.2 395 Q5SZT7 395 100% 0 0

Chromosomal Locations for CCDS 26276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21467254 21468441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGTCGCCTGTATCCCGATCTCGCCCTAATGAGGACACTCTGGGCTCTCAGAAACGACGACGTTTCTCGG
AGAGCCCACCGTCGGCGTTACAGACTAGCCGATCACCTCGGGGAGGCGGTTTCGGCTCTCTCCTCAGCGG
TCCTGAGGGGCTCCAGCCTCCGCGGGGTGCTCAGGGCGTCCGGCCACTGCATCCCATCAGCCGCCCCAGG
TCTGGAGAACGACCGCTACCGCTGGGGATCCGTACGCTTGCCTGCTCTTCCTCTCCCATCTGTGGTGGAT
ACCGTTACCACCACAACTATGCGGGAGATCCTTCGTGGGCTGAGGACCAGGAGAAGGAAAAGGAGGAGAG
TTATAGGCAAAGGAGGCTGAAGGAAAGAGAGAGGATTGGAGAGCTGGGAGCGCCTGAGGTATGGGGACTG
TCACCCAAGATTCCTGAGCCAGATTCTGATGAACATACACCAGCTGAAGATGAGGTGAAGAATCAGAAGA
GTAGCAGTTCAGATTTCACCAATGAAGAAAAAAGGACAAAGACCAGTCATTCAACAAAGAAAAAAAGAAA
GAAAAAGCCTTCCAAAAGGAAGCATAAAAAATATTATGACAGCAGTTCAGACTGTCATTCTAGCTCTGAT
AGTGATAAAAAGAAAGTTAAAACCAAGAAGAAAGAGAAGAAAAAGAAACATCGGGCAAAACAGCTCAAGA
AGAAGAGGACTAAAAAAGAATACAATGACATAAGCTGCAAAGCTTCAGAAAGGGACTTGCCAGAAGATGC
GTGGATGGAACAGTCGATGAGTGCAGAGAGCATGGATTTAATAGGCCCAGAAGCACCTGTGATACACACC
TCTCAAGATGAGAAACCTTTGAATTATGGCCATGCTCTGCTTCCTGGTGAAGGTGCAGCAATGGCTGAAT
ATGTAAAAGCCGGGAAGCGTATCCCACGAAGAGGTGAAATTGGGTTGACAAGTGAAGAGATTGCCTCATT
TGAATGTTCAGGTTACGTCATGAGTGGTAGCAGGCATCGCCGAATGGAGGCTGTAAGACTGCGTAAAGAG
AACCAGATTTACAGTGCTGATGAGAAACGAGCCCTTGCATCCTTTAACCAAGAAGAGAGGCGGAAGAGAG
AAAATAAGATCCTAGCCAGCTTTCGAGAAATGGTGTACAGAAAGACAAAAGGGAAAGATGACAAGTGA

Translation (395 aa):
MSPVSRSRPNEDTLGSQKRRRFSESPPSALQTSRSPRGGGFGSLLSGPEGLQPPRGAQGVRPLHPISRPR
SGERPLPLGIRTLACSSSPICGGYRYHHNYAGDPSWAEDQEKEKEESYRQRRLKERERIGELGAPEVWGL
SPKIPEPDSDEHTPAEDEVKNQKSSSSDFTNEEKRTKTSHSTKKKRKKKPSKRKHKKYYDSSSDCHSSSD
SDKKKVKTKKKEKKKKHRAKQLKKKRTKKEYNDISCKASERDLPEDAWMEQSMSAESMDLIGPEAPVIHT
SQDEKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGYVMSGSRHRRMEAVRLRKE
NQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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