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Report for CCDS26200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26200.1 Public Mus musculus 12 Jag2 23 108 98 CCDS HistoryNCBI Gene:16450Re-query CCDS DB by CCDS ID:26200.1Re-query CCDS DB by GeneID:16450See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075827.4 ENSMUSP00000075224.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075827.4Link to Ensembl Protein Viewer:ENSMUSP00000075224.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075827Re-query CCDS DB by Protein ID:ENSMUSP00000075224
Original member NCBI NM_010588.2 NP_034718.2 Updated not alive Link to Nucleotide Sequence:NM_010588.2Link to Protein Sequence:NP_034718.2Re-query CCDS DB by Nucleotide ID:NM_010588Re-query CCDS DB by Protein ID:NP_034718
Current member NCBI NM_010588.3 NP_034718.2 Accepted alive Link to Nucleotide Sequence:NM_010588.3Link to Protein Sequence:NP_034718.2Re-query CCDS DB by Nucleotide ID:NM_010588Re-query CCDS DB by Protein ID:NP_034718Link to BLAST:NP_034718.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034718.2 1247 Q9QYE5 1247 100% 0 0

Chromosomal Locations for CCDS 26200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112908889 112909385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112909553 112909709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112910444 112910575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112911059 112911307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112911703 112911818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112911909 112912022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112912529 112912614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112912693 112912720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112913165 112913281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112913390 112913503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112913616 112913729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112913936 112914049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112914126 112914278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112914357 112914507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112915198 112915371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112915471 112915517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112915605 112915718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112915880 112915993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112916334 112916447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112916604 112916723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112916809 112916939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112920072 112920132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112920231 112920482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112922000 112922057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112928882 112929232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112929419 112929484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3744 nt):
ATGCGGGCACGCGGCTGGGGACGCCTGCCTCGGCGGCTGCTGCTGCTACTGGTTCTGTGCGTGCAGGCGA
CGCGGCCCATGGGCTATTTCGAGCTGCAGCTGAGCGCGCTGCGGAACGTGAACGGGGAGCTGCTGAGCGG
CGCCTGCTGTGACGGCGACGGCCGGACGACGCGCGCGGGGGGCTGCGGCCGCGACGAGTGCGACACGTAC
GTGCGCGTGTGCCTTAAGGAGTACCAGGCCAAGGTGACGCCCACGGGGCCCTGCAGCTACGGCTACGGCG
CCACGCCCGTGCTGGGTGGCAACTCCTTCTACCTGCCGCCGGCGGGCGCTGCGGGGGACCGAGCGCGCGC
GCGGTCTCGGACCGGCGGCCACCAGGACCCGGGCCTCGTCGTCATTCCCTTTCAGTTCGCCTGGCCGCGT
TCTTTCACCCTCATCGTGGAGGCCTGGGACTGGGACAATGACACCACTCCAGATGAGGAGCTGCTGATTG
AGCGGGTGTCGCACGCTGGCATGATCAACCCCGAGGACCGCTGGAAGAGCCTGCACTTCAGCGGCCACGT
GGCACACCTGGAGCTGCAGATCCGAGTACGCTGTGATGAGAACTACTACAGTGCCACCTGCAACAAGTTC
TGCCGGCCCCGCAACGACTTCTTTGGCCACTATACCTGCGACCAGTACGGCAACAAGGCCTGCATGGATG
GCTGGATGGGCAAAGAATGCAAAGAAGCCGTGTGTAAACAAGGATGTAATTTGCTCCACGGGGGATGCAC
TGTGCCTGGGGAGTGCAGGTGCAGCTACGGCTGGCAGGGCAAGTTCTGTGACGAGTGTGTCCCCTACCCT
GGCTGCGTGCATGGCAGCTGTGTGGAGCCCTGGCACTGTGACTGTGAGACCAACTGGGGTGGCCTGCTCT
GTGACAAAGACCTGAACTACTGTGGCAGCCACCACCCCTGTGTCAACGGGGGTACCTGCATCAATGCTGA
GCCTGACCAATACCTCTGCGCCTGCCCAGATGGCTACTTGGGCAAGAACTGCGAGCGGGCTGAGCACGCC
TGTGCCTCCAACCCGTGTGCCAATGGGGGCTCTTGCCACGAAGTGCCATCTGGCTTTGAATGCCACTGTC
CGTCAGGATGGAACGGACCCACCTGTGCGCTCGACATTGATGAGTGTGCCTCTAACCCATGTGCAGCGGG
TGGTACCTGCGTGGATCAGGTGGACGGCTTCGAGTGCATCTGCCCGGAGCAGTGGGTGGGGGCTACTTGC
CAGCTGGACGCCAATGAGTGTGAAGGGAAGCCGTGCCTTAATGCTTTTTCTTGCAAAAACCTGATTGGCG
GCTATTACTGTGATTGCCTCCCGGGCTGGAAGGGCATCAACTGCCAAATCAACATCAACGATTGCCATGG
GCAGTGTCAGCATGGGGGCACCTGCAAGGACCTGGTCAATGGGTACCAGTGTGTGTGCCCGCGGGGCTTT
GGAGGTCGCCATTGCGAACTAGAGTACGACAAGTGTGCCAGCAGCCCCTGCCGCCGGGGTGGCATCTGTG
AGGACCTGGTGGATGGCTTCCGCTGCCACTGCCCACGGGGCCTCTCTGGGCTGCACTGTGAGGTGGACAT
GGATCTCTGTGAACCAAGCCCCTGCCTCAACGGTGCTCGCTGCTACAACCTTGAGGGTGACTACTACTGC
GCCTGCCCAGAAGACTTTGGTGGCAAGAACTGCTCAGTGCCCAGGGACACATGCCCTGGCGGGGCATGTA
GAGTGATCGATGGCTGCGGGTTCGAGGCAGGGTCCAGGGCACGCGGTGTCGCACCCTCTGGTATATGTGG
CCCTCACGGGCACTGCGTTAGCCTGCCTGGGGGAAACTTCTCCTGCATCTGTGACAGCGGCTTCACAGGC
ACCTACTGCCATGAAAACATTGACGACTGCATGGGCCAGCCCTGCCGCAACGGGGGCACGTGCATTGACG
AAGTGGACTCCTTCCGCTGCTTCTGCCCCAGTGGCTGGGAAGGAGAACTCTGTGACATCAATCCCAACGA
CTGCCTCCCCGACCCCTGCCACAGCCGCGGCCGCTGCTATGACCTGGTCAATGACTTCTACTGTGCCTGT
GACGATGGCTGGAAGGGCAAGACCTGCCACTCACGCGAGTTCCAGTGTGACGCCTACACCTGCAGCAACG
GTGGCACATGCTATGACAGCGGCGACACCTTCCGCTGCGCGTGCCCTCCGGGCTGGAAGGGCAGCACCTG
CACCATCGCCAAGAACAGCAGCTGTGTGCCCAATCCCTGTGTGAATGGAGGCACCTGCGTGGGCAGCGGA
GACTCTTTCTCCTGCATCTGCCGGGATGGCTGGGAGGGCCGCACCTGCACACATAACACCAATGACTGCA
ACCCTCTGCCCTGCTATAACGGAGGCATCTGTGTTGATGGCGTCAACTGGTTCCGCTGCGAGTGTGCGCC
TGGCTTTGCGGGTCCTGACTGCCGTATCAACATTGATGAGTGCCAGTCCTCGCCCTGTGCCTACGGAGCC
ACGTGTGTGGATGAGATCAACGGGTACCGCTGCAGCTGCCCACCAGGTCGTTCTGGCCCCAGGTGCCAGG
AAGTGGTCATATTCACGAGGCCCTGCTGGTCCCGGGGAATGTCCTTCCCGCATGGGAGTTCCTGGATGGA
AGACTGCAACAGCTGCCGCTGCCTGGATGGCCACCGGGATTGTAGCAAGGTATGGTGCGGATGGAAGCCT
TGCCTGCTCTCTGGTCAGCCCAGCGATCCGAGTGCCCAGTGCCCCCCAGGGCAGCAATGTCAGGAGAAGG
CCGTGGGTCAGTGCTTGCAGCCACCCTGTGAGAACTGGGGGGAGTGTACAGCGGAGGAGCCTCTGCCACC
CAGCACCCCCTGTCAGCCACGGAGCAGTCATTTGGACAACAACTGTGCCCGACTCACACTGCGCTTCAAC
CGTGATCAAGTGCCTCAGGGCACCACCGTGGGCGCTATCTGCTCTGGAATCCGAGCCTTGCCTGCCACGA
GGGCGGCGGCACACGACCGCCTCCTCCTGCTGCTTTGTGATCGAGCATCCTCGGGGGCCAGTGCTGTGGA
GGTGGCTGTGTCTTTCAGCCCTGCAAGGGACCTGCCTGACAGCAGCCTGATCCAGAGCACAGCCCACGCC
ATCGTGGCTGCTATCACTCAGAGAGGAAATAGCTCACTGCTGCTGGCTGTCACCGAGGTCAAGGTGGAAA
CAGTTGTTATGGGTGGCTCTTCCACAGGTCTGTTGGTGCCCGTGCTGTGCAGCGTGTTCAGTGTGCTGTG
GCTCGCCTGTGTGGTTATCTGCGTATGGTGGACACGAAAGCGCAGGAAAGAACGTGAGAGGAGCCGGCTA
CCACGGGATGAGAGCGCCAACAACCAGTGGGCCCCGCTCAATCCCATCCGCAACCCCATTGAGCGGCCAG
GCGGCAGCGGTCTGGGAACTGGGGGCCACAAGGACATACTCTACCAGTGCAAAAACTTCACACCGCCGCC
CCGCAGGGCAGGCGAGGCACTGCCCGGGCCAGCTGGCCATGGGGCTGGTGGGGAGGACGAGGAGGATGAA
GAGCTGAGCCGTGGAGATGGGGACTCCCCAGAGGCAGAGAAGTTCATCTCACACAAGTTCACCAAAGACC
CCAGCTGCTCCCTCGGAAGGCCAGCCCGCTGGGCTCCAGGGCCCAAAGTGGACAACCGCGCCGTCAGAAG
TACCAAGGACGTGCGCCGTGCTGGCAGGGAATAG

Translation (1247 aa):
MRARGWGRLPRRLLLLLVLCVQATRPMGYFELQLSALRNVNGELLSGACCDGDGRTTRAGGCGRDECDTY
VRVCLKEYQAKVTPTGPCSYGYGATPVLGGNSFYLPPAGAAGDRARARSRTGGHQDPGLVVIPFQFAWPR
SFTLIVEAWDWDNDTTPDEELLIERVSHAGMINPEDRWKSLHFSGHVAHLELQIRVRCDENYYSATCNKF
CRPRNDFFGHYTCDQYGNKACMDGWMGKECKEAVCKQGCNLLHGGCTVPGECRCSYGWQGKFCDECVPYP
GCVHGSCVEPWHCDCETNWGGLLCDKDLNYCGSHHPCVNGGTCINAEPDQYLCACPDGYLGKNCERAEHA
CASNPCANGGSCHEVPSGFECHCPSGWNGPTCALDIDECASNPCAAGGTCVDQVDGFECICPEQWVGATC
QLDANECEGKPCLNAFSCKNLIGGYYCDCLPGWKGINCQININDCHGQCQHGGTCKDLVNGYQCVCPRGF
GGRHCELEYDKCASSPCRRGGICEDLVDGFRCHCPRGLSGLHCEVDMDLCEPSPCLNGARCYNLEGDYYC
ACPEDFGGKNCSVPRDTCPGGACRVIDGCGFEAGSRARGVAPSGICGPHGHCVSLPGGNFSCICDSGFTG
TYCHENIDDCMGQPCRNGGTCIDEVDSFRCFCPSGWEGELCDINPNDCLPDPCHSRGRCYDLVNDFYCAC
DDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCTIAKNSSCVPNPCVNGGTCVGSG
DSFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINIDECQSSPCAYGA
TCVDEINGYRCSCPPGRSGPRCQEVVIFTRPCWSRGMSFPHGSSWMEDCNSCRCLDGHRDCSKVWCGWKP
CLLSGQPSDPSAQCPPGQQCQEKAVGQCLQPPCENWGECTAEEPLPPSTPCQPRSSHLDNNCARLTLRFN
RDQVPQGTTVGAICSGIRALPATRAAAHDRLLLLLCDRASSGASAVEVAVSFSPARDLPDSSLIQSTAHA
IVAAITQRGNSSLLLAVTEVKVETVVMGGSSTGLLVPVLCSVFSVLWLACVVICVWWTRKRRKERERSRL
PRDESANNQWAPLNPIRNPIERPGGSGLGTGGHKDILYQCKNFTPPPRRAGEALPGPAGHGAGGEDEEDE
ELSRGDGDSPEAEKFISHKFTKDPSCSLGRPARWAPGPKVDNRAVRSTKDVRRAGRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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