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Report for CCDS26157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26157.1 Public Mus musculus 12 Vrk1 23 108 98 CCDS HistoryNCBI Gene:22367Re-query CCDS DB by CCDS ID:26157.1Re-query CCDS DB by GeneID:22367See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085026.11 ENSMUSP00000082101.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085026.11Link to Ensembl Protein Viewer:ENSMUSP00000082101.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085026Re-query CCDS DB by Protein ID:ENSMUSP00000082101
Original member Current member NCBI NM_001029843.2 NP_001025014.1 Accepted alive Link to Nucleotide Sequence:NM_001029843.2Link to Protein Sequence:NP_001025014.1Re-query CCDS DB by Nucleotide ID:NM_001029843Re-query CCDS DB by Protein ID:NP_001025014Link to BLAST:NP_001025014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025014.1 416 Q80X41-3 416 100% 0 0

Chromosomal Locations for CCDS 26157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106036545 106036704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106042837 106042892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106050935 106051004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106051760 106051847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106055802 106055910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106056021 106056113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106057843 106057975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106058576 106058696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106059618 106059676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106062630 106062808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106070525 106070615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106073619 106073678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106075007 106075038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGCCCCGTGTAAAAGCAGCTCAGGCTGGAAGACCCGGACCTGCGAAGAGGCGCCTCGCAGAGCAGTTTG
CCGCTGGAGAGGTCCTAACCGACATGTCTAGGAAGGAGTGGAAACTAGGATTGCCCATTGGCCAAGGTGG
CTTTGGCTGCATCTATCTGGCGGACACAAATTCTTCCAAACCGGTTGGCAGTGACGCGCCCTGTGTTGTG
AAAGTGGAACCCAGTGACAATGGACCTCTTTTCACGGAATTAAAGTTCTACCAGAGGGCTGCTAAACCAG
AGCAAATTCAGAAATGGATTCGTACACATAAATTGAAGTACCTTGGTGTTCCTAAGTATTGGGGATCTGG
TCTACATGATAAAAATGGAAAAAGTTACAGGTTTATGATAATGGACCGCTTTGGGAGTGACCTTCAGAAA
ATATATGAAGCAAATGCCAAAAGGTTTTCTCGGAAAACTGTATTGCAGCTAAGCTTAAGAATTCTGGATA
TCCTGGAGTACATCCATGAGCATGAGTACGTGCACGGGGACATCAAGGCCTCCAACCTGCTCCTGAGTCA
CAAGAACCCTGACCAGGTATATTTGGTAGACTATGGCCTTGCTTATCGGTACTGCCCAGATGGAGTTCAT
AAAGAGTACAAGGAAGATCCCAAAAGGTGCCATGACGGCACCCTGGAGTTCACCAGCATCGACGCTCACA
AAGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCATGATCCAGTGGCTCAGCGG
CTGTCTTCCTTGGGAAGATAACTTGAAAGATCCTAACTACGTTAGGGATTCCAAAATTAGATACAGAGAC
AACGTCGCAGCTTTGATGGAGAAATGCTTTCCTGAGAAAAATAAGCCAGGTGAGATCGCTAAGTACATGG
AGTCTGTGAAACTACTGGAATACACCGAAAAACCTCTCTATCAAAACCTACGTGATATCCTTTTACAAGG
ACTAAAAGCTATAGGAAGTAAAGACGACGGCAAACTGGATTTTAGTGCTGTGGAGAACGGAAGTGTGAAG
ACAAGACCAGCCTCAAAGAAGCGGAAGAAAGAAGCAGAAGAAAGCGCGGTGTGCGCTGTGGAGGACATGG
AGTGCTCAGACACACAGGTGCAAGAGGCCGCACAGACCCGTTCCAGGAGGCAGCAGCATTTGGGATTGGA
ACAAGACATGCTAAGGCTAGACCGTAGGGGTTCACGAACCAGAAAGAAAGCCCAGAAGTAA

Translation (416 aa):
MPRVKAAQAGRPGPAKRRLAEQFAAGEVLTDMSRKEWKLGLPIGQGGFGCIYLADTNSSKPVGSDAPCVV
KVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTHKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQK
IYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLSHKNPDQVYLVDYGLAYRYCPDGVH
KEYKEDPKRCHDGTLEFTSIDAHKGVAPSRRGDLEILGYCMIQWLSGCLPWEDNLKDPNYVRDSKIRYRD
NVAALMEKCFPEKNKPGEIAKYMESVKLLEYTEKPLYQNLRDILLQGLKAIGSKDDGKLDFSAVENGSVK
TRPASKKRKKEAEESAVCAVEDMECSDTQVQEAAQTRSRRQQHLGLEQDMLRLDRRGSRTRKKAQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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