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Report for CCDS26066.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26066.2 Public Mus musculus 12 Esrrb 23 108 98 CCDS HistoryNCBI Gene:26380Re-query CCDS DB by CCDS ID:26066.2Re-query CCDS DB by GeneID:26380See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 26066.2
An upstream translation start codon is selected for this CCDS for consistency with other family members. The use of an alternative upstream start codon would result in a protein that is 21 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26066.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110204.8 ENSMUSP00000105833.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110204.8Link to Ensembl Protein Viewer:ENSMUSP00000105833.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110204Re-query CCDS DB by Protein ID:ENSMUSP00000105833
Original member Current member NCBI NM_011934.4 NP_036064.3 Accepted alive Link to Nucleotide Sequence:NM_011934.4Link to Protein Sequence:NP_036064.3Re-query CCDS DB by Nucleotide ID:NM_011934Re-query CCDS DB by Protein ID:NP_036064Link to BLAST:NP_036064.3

Chromosomal Locations for CCDS 26066.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86421915 86421964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86470146 86470555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86488547 86488663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86505815 86505925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86506349 86506510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86514281 86514550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86518821 86519065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGACGTGTCCGAACTCTGCATCCCGGACCCCCTTGGCTACCACAACCAGCTGCTGAACCGAATGTCGT
CCGAAGACAGGCACCTGGGCTCTAGTTGCGGCTCCTTCATCAAGACGGAGCCATCCAGCCCGTCCTCGGG
CATTGATGCCCTCAGCCACCACAGCCCCAGCGGCTCGTCGGACGCCAGTGGTGGCTTTGGCATTGCCCTG
AGCACCCACGCCAACGGTCTGGACTCGCCGCCTATGTTCGCAGGTGCGGGGCTGGGAGGCAACCCGTGCC
GCAAGAGCTACGAGGACTGTACTAGTGGTATCATGGAGGACTCCGCCATCAAATGCGAGTACATGCTTAA
CGCCATCCCCAAGCGCCTGTGCCTCGTGTGCGGGGACATTGCCTCTGGCTACCACTACGGAGTGGCCTCC
TGCGAGGCTTGCAAGGCGTTCTTCAAGAGAACCATTCAAGGCAACATCGAGTACAACTGCCCGGCCACCA
ATGAATGTGAGATCACCAAACGGAGGCGCAAGTCCTGTCAGGCCTGCCGATTCATGAAATGCCTCAAAGT
GGGGATGCTGAAGGAAGGTGTGCGCCTTGACCGAGTTCGAGGAGGCCGCCAGAAGTACAAGCGACGGCTG
GATTCGGAGAACAGCCCCTACCTGAACCTGCCGATTTCCCCACCTGCTAAAAAGCCATTGACTAAGATCG
TCTCGAATCTACTAGGGGTTGAGCAGGACAAGCTGTATGCTATGCCTCCCAACGATATCCCCGAGGGAGA
TATCAAGGCCCTGACCACTCTCTGTGAATTGGCAGATCGGGAGCTTGTGTTCCTCATCAACTGGGCCAAG
CACATCCCAGGCTTCCCCAGTCTGACACTTGGGGACCAGATGAGCCTGCTGCAGAGTGCCTGGATGGAGA
TTCTCATCTTGGGCATCGTGTACCGCTCGCTCCCATACGATGACAAGCTGGCATACGCCGAGGACTATAT
CATGGATGAGGAACACTCTCGCCTGGTAGGGCTGCTGGACCTTTACCGAGCCATCCTGCAGCTGGTGCGC
AGGTACAAGAAACTCAAGGTAGAGAAGGAAGAGTTTATGATCCTCAAGGCCCTGGCCCTCGCCAACTCAG
ATTCGATGTACATTGAGAACCTGGAGGCGGTGCAGAAGCTCCAGGACCTGCTGCACGAGGCGCTGCAGGA
CTATGAGCTGAGTCAGCGCCACGAGGAGCCGCGGAGGGCCGGCAAGCTGCTGCTGACGCTGCCCCTGCTG
AGGCAGACAGCCGCCAAAGCCGTGCAACACTTCTACAGTGTGAAACTGCAGGGCAAGGTGCCCATGCACA
AACTCTTCCTGGAGATGCTGGAGGCCAAGGTGTGA

Translation (454 aa):
MDVSELCIPDPLGYHNQLLNRMSSEDRHLGSSCGSFIKTEPSSPSSGIDALSHHSPSGSSDASGGFGIAL
STHANGLDSPPMFAGAGLGGNPCRKSYEDCTSGIMEDSAIKCEYMLNAIPKRLCLVCGDIASGYHYGVAS
CEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRL
DSENSPYLNLPISPPAKKPLTKIVSNLLGVEQDKLYAMPPNDIPEGDIKALTTLCELADRELVFLINWAK
HIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSLPYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVR
RYKKLKVEKEEFMILKALALANSDSMYIENLEAVQKLQDLLHEALQDYELSQRHEEPRRAGKLLLTLPLL
RQTAAKAVQHFYSVKLQGKVPMHKLFLEMLEAKV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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