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Report for CCDS26030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26030.1 Public Mus musculus 12 Psen1 23 108 98 CCDS HistoryNCBI Gene:19164Re-query CCDS DB by CCDS ID:26030.1Re-query CCDS DB by GeneID:19164See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041806.12 ENSMUSP00000048363.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041806.12Link to Ensembl Protein Viewer:ENSMUSP00000048363.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041806Re-query CCDS DB by Protein ID:ENSMUSP00000048363
Original member Current member EBI ENSMUST00000101225.1 ENSMUSP00000098786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101225.1Link to Ensembl Protein Viewer:ENSMUSP00000098786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101225Re-query CCDS DB by Protein ID:ENSMUSP00000098786
Original member Current member NCBI NM_001362271.1 NP_001349200.1 Accepted alive Link to Nucleotide Sequence:NM_001362271.1Link to Protein Sequence:NP_001349200.1Re-query CCDS DB by Nucleotide ID:NM_001362271Re-query CCDS DB by Protein ID:NP_001349200Link to BLAST:NP_001349200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349200.1 467 P49769-1 467 100% 0 0

Chromosomal Locations for CCDS 26030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 83699565 83699651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83712304 83712554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83714764 83714905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83722991 83723058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83724496 83724716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83728226 83728324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83728698 83728784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83730539 83730712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83731674 83731792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83733916 83734071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGACAGAGATACCTGCACCTTTGTCCTACTTCCAGAATGCCCAGATGTCTGAGGACAGCCACTCCAGCA
GCGCCATCCGGAGCCAGAATGACAGCCAAGAACGGCAGCAGCAGCATGACAGGCAGAGACTTGACAACCC
TGAGCCAATATCTAATGGGCGGCCCCAGAGTAACTCAAGACAGGTGGTGGAACAAGATGAGGAGGAAGAC
GAAGAGCTGACATTGAAATATGGAGCCAAGCATGTCATCATGCTCTTTGTCCCCGTGACCCTCTGCATGG
TCGTCGTCGTGGCCACCATCAAATCAGTCAGCTTCTATACCCGGAAGGACGGTCAGCTAATCTACACCCC
ATTCACAGAAGACACTGAGACTGTAGGCCAAAGAGCCCTGCACTCGATCCTGAATGCGGCCATCATGATC
AGTGTCATTGTCATTATGACCATCCTCCTGGTGGTCCTGTATAAATACAGGTGCTACAAGGTCATCCACG
CCTGGCTTATTATTTCATCTCTGTTGTTGCTGTTCTTTTTTTCGTTCATTTACTTAGGGGAAGTATTTAA
GACCTACAATGTCGCCGTGGACTACGTTACAGTAGCACTCCTAATCTGGAATTTTGGTGTGGTCGGGATG
ATTGCCATCCACTGGAAAGGCCCCCTTCGACTGCAGCAGGCGTATCTCATTATGATCAGTGCCCTCATGG
CCCTGGTATTTATCAAGTACCTCCCCGAATGGACCGCATGGCTCATCTTGGCTGTGATTTCAGTATATGA
TTTGGTGGCTGTTTTATGTCCCAAAGGCCCACTTCGTATGCTGGTTGAAACAGCTCAGGAAAGAAATGAG
ACTCTCTTTCCAGCTCTTATCTATTCCTCAACAATGGTGTGGTTGGTGAATATGGCTGAAGGAGACCCAG
AAGCCCAAAGGAGGGTACCCAAGAACCCCAAGTATAACACACAAAGAGCGGAGAGAGAGACACAGGACAG
TGGTTCTGGGAACGATGATGGTGGCTTCAGTGAGGAGTGGGAGGCCCAAAGAGACAGTCACCTGGGGCCT
CATCGCTCCACTCCCGAGTCAAGAGCTGCTGTCCAGGAACTTTCTGGGAGCATTCTAACGAGTGAAGACC
CGGAGGAAAGAGGAGTAAAACTTGGACTGGGAGATTTCATTTTCTACAGTGTTCTGGTTGGTAAGGCCTC
AGCAACCGCCAGTGGAGACTGGAACACAACCATAGCCTGCTTTGTAGCCATACTGATCGGCCTGTGCCTT
ACATTACTCCTGCTCGCCATTTTCAAGAAAGCGTTGCCAGCCCTCCCCATCTCCATCACCTTCGGGCTCG
TGTTCTACTTCGCCACGGATTACCTTGTGCAGCCCTTCATGGACCAACTTGCATTCCATCAGTTTTATAT
CTAG

Translation (467 aa):
MTEIPAPLSYFQNAQMSEDSHSSSAIRSQNDSQERQQQHDRQRLDNPEPISNGRPQSNSRQVVEQDEEED
EELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTETVGQRALHSILNAAIMI
SVIVIMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYVTVALLIWNFGVVGM
IAIHWKGPLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE
TLFPALIYSSTMVWLVNMAEGDPEAQRRVPKNPKYNTQRAERETQDSGSGNDDGGFSEEWEAQRDSHLGP
HRSTPESRAAVQELSGSILTSEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL
TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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