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Report for CCDS26026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26026.1 Public Mus musculus 12 Sipa1l1 23 108 98 CCDS HistoryNCBI Gene:217692Re-query CCDS DB by CCDS ID:26026.1Re-query CCDS DB by GeneID:217692See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053969.6 ENSMUSP00000061014.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053969.6Link to Ensembl Protein Viewer:ENSMUSP00000061014.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053969Re-query CCDS DB by Protein ID:ENSMUSP00000061014
Original member Current member EBI ENSMUST00000166429.8 ENSMUSP00000131030.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166429.8Link to Ensembl Protein Viewer:ENSMUSP00000131030.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166429Re-query CCDS DB by Protein ID:ENSMUSP00000131030
Original member Current member EBI ENSMUST00000222714.1 ENSMUSP00000152212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222714.1Link to Ensembl Protein Viewer:ENSMUSP00000152212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222714Re-query CCDS DB by Protein ID:ENSMUSP00000152212
Original member NCBI NM_172579.3 NP_766167.2 Updated not alive Link to Nucleotide Sequence:NM_172579.3Link to Protein Sequence:NP_766167.2Re-query CCDS DB by Nucleotide ID:NM_172579Re-query CCDS DB by Protein ID:NP_766167
Current member NCBI NM_172579.4 NP_766167.2 Accepted alive Link to Nucleotide Sequence:NM_172579.4Link to Protein Sequence:NP_766167.2Re-query CCDS DB by Nucleotide ID:NM_172579Re-query CCDS DB by Protein ID:NP_766167Link to BLAST:NP_766167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766167.2 1782 Q8C0T5-1 1782 100% 0 0

Chromosomal Locations for CCDS 26026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 82341002 82342499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82357233 82357363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82362943 82363131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82372368 82372542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82384651 82384754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82387555 82387712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82396193 82396766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82397346 82397620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82402910 82403179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82416904 82417050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82420538 82420662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82422375 82422493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82425013 82425455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82432753 82432992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82433689 82433854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82437688 82437934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82440815 82440961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82446817 82446931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82449310 82449391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82449901 82450044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5349 nt):
ATGACCAGTTTGAAGCGGTCGCAGACCGAAAGACCTGTCACCGCTGACAGAGCCTCTGTTGTCAGCACAG
ATGGCGCCCCCAAAGTCCACACCGATGACTTCTACATGCGTCGCTTCCGCTCTCAGAATGGCAGCCTAGG
ATCATCAGTCATGGCTGCAGTGGGGCCCCCTCGAAGTGAAGGCCCTCACCATATCACCTCAACCCCCGGG
GTCCCCAAGATGGGGGTTAGGGCAAGAATAGCAGATTGGCCTCCGAGAAAGGAAAATGTAAAAGAATCCA
GCCGTTCAAGCCAGGAAATAGAAACCTCAAGTTGCCTTGAGAGCCTGTCCTCCAAAGGCAGTCCTGTGAG
TCAGGGGAGTTCTGTTAGCCTCAATTCCAATGACTCAGCCATGCTGAAGAGCATACAGAACACCCTGAAG
AACAAGACAGGGCCAGCGGAGAGCATGGACTCCAGATTCCTCATGCCTGAAGCCTACCCCAGTTCCCCCA
GGAAAGCCCTTCGCAGAATTCGGCAGCGCAGCAACAGTGATATCACCATAAGTGAGCTTGATGTGGATAG
CTTCGATGAATGTATCTCCCCAACCTACAAGTCGGGGCCATCATTGCACAGGGAATATGGCAGCACATCT
TCAATCGACAAGCAGGGAACATCCGGAGACAGCTTCTTCGATTTGTTAAAGGGCTATAAAGATGACAGAT
CTGACCGAGGTCCAACTCCAACCAAACTCAGTGACTTCCTCATCACTGGTGGGGGCAAGGGTTCTGGTTT
CTCCTTGGATGTGATCGATGGCCCCATCTCACAGAGAGAGAACCTCAGGCTTTTCAAGGAAAGGGAAAAA
CCACTCAAGCGACGCTCTAAGTCTGAGACTGGAGACTCGTCCATTTTTCGTAAATTGCGCAATGCCAAAG
GTGAAGAACTCGGGAAATCATCAGACCTTGAAGACAACAGATCAGAAGATTCTGTGAGGCCCTGGACATG
TCCAAAGTGCTTTGCCCACTATGATGTCCAGAGCATATTGTTTGACTTGAATGAAGCCATTATGAACAGA
CATAATGTGATTAAGAGGAGAAACACCACAACAGGAGCTTCGGCGGCTGCGGTGGCATCCTTGGTCTCCG
GACCTCTGTCTCACTCAGCCAGCTTCAGCTCTCCCATGGGCAGCACAGAGGACCTCAACTCCAAAGGAAG
CCTTGGCATGGACCAGGGAGATGACAAGAGCAATGAACTCGTCATGAGCTGTCCGTATTTTCGGAATGAG
ATTGGGGGAGAAGGTGAGAGGAAGATCAGCCTGTCCAAGTCGAATTCTGGCTCATTTAGTGGGTGTGAGA
GCACATCCTTTGAGTCTGCCCTCAGCTCTCACTGCACCAACGCGGGCGTGGCAGTTCTCGAAGTGCCCAA
GGAAAGCTTGATGCTGCATCTGGACAGGGTGAAAAGGTACACCGTGGAACACGTGGATCTTGGCGCATAC
TATTACAGGAAGTTCTTCTACCAGAAGGAACACTGGAACTATTTTGGGGCTGATGAGAACCTCGGTCCAG
TGGCTGTGAGCATTCGAAGGGAAAAACCAGAAGACATGAAGGAAAACGGATCTCCATACAACTACCGAAT
AATATTCAGGACTAGTGAGCTCATGACGCTGAGGGGGTCTGTCCTGGAGGATGCCATTCCCTCCACGGCC
AAGCACTCGACAGCCAGGGGATTGCCTCTGAAAGAGGTGCTGGAACACGTGATCCCAGAGCTCAACGTGC
AGTGCCTGCGCTTGGCCTTCAACACACCCAAAGTCACAGAGCAGCTCATGAAACTGGACGAGCAAGGGCT
GAACTATCAGCAGAAAGTAGGCATCATGTACTGCAAAGCAGGCCAGAGCACGGAGGAGGAGATGTACAAC
AACGAGTCTGCAGGCCCAGCCTTTGAGGAGTTCCTTCAGCTGCTGGGGGAACGAGTCCGGCTAAAAGGAT
TCGAGAAGTATCGTGCGCAGCTTGACACCAAAACTGACTCCACTGGAACCCACTCTCTGTACACAACCTA
CAAAGACTATGAGATAATGTTCCACGTCTCCACCATGCTGCCCTACACACCTAACAACAAGCAACAGCTC
CTGAGGAAGCGGCACATTGGGAATGACATTGTGACAATAGTTTTCCAAGAGCCTGGAGCACAACCATTCA
GCCCGAAAAACATCCGGTCTCACTTTCAGCATGTTTTTGTCATTGTCCGGGCTCACAACCCTTGCACTGA
GAGTGTCTGTTACAGTGTGGCAGTCACCAGGTCCAGAGATGTACCTTCTTTTGGACCTCCCATCCCTAAA
GGGGTCACCTTCCCCAAGTCAAATGTGTTCAGGGACTTCCTTTTGGCCAAAGTGATAAATGCAGAAAATG
CTGCTCATAAATCAGAGAAGTTCCGGGCCATGGCGACAAGGACCCGCCAGGAATACCTGAAAGATCTGGC
AGAAAAGAATGTCACCAACACACCTATTGACCCTTCTGGCAAGTTTCCATTTATTTCTCTGGCCTCCAAG
AAGAAGGAAAAGTCTAAGCCTTATCCAGGAGCTGAGCTCAGTAGCATGGGGGCCATTGTGTGGGCTGTCC
GGGCCAAAGACTACAACAAGGCCATGGAGTTCGACTGCCTCCTTGGGATCTCCAGCGAGTTCATCGTCCT
CATTGAGCAGGAGACAAAGAGTGTGGCTTTCAATTGCTCCTGCAGAGATGTCATAGGGTGGACTTCCAGC
GACACCAGCCTCAAAATCTTCTATGAGCGGGGAGAATGTGTGTCGGTGGAGAGCTTCATTAGCGGTGAAG
ATATCAAAGAAATTGTCAGAAGGCTGCAGTTTGTTTCAAAAGGTTGTGAATCTGTGGAAATGACTCTGCG
AAGAAATGGGCTGGGGCAGCTTGGCTTCCATGTCAACTATGAGGGCATTGTGGCGGATGTAGAACCCTAC
GGCTACGCATGGCAAGCAGGGCTGAGGCAGGGCAGCCGCCTGGTGGAGATCTGCAAGGTAGCAGTGGCCA
CCCTGAGCCATGAACAGATGATCGATCTCTTGAGAACATCAGTCACAGTGAAGGTTGTCATTATCCCTCC
CCATGACGACTGCACCCCACGGAGGAGTTGCTCAGAAACCTACCGCATGCCAGTGATGGAGTACCAGATG
AATGAAGGCATTTCCTACGAGTTCAAGTTTCCCTTCCGGAATAATAACAAATGGCAGCGGAATGCCAGCA
AGGGTGCTCATTCGCCCCAGGTTCCATCTCAGCTGCAGAGTCCCATGACCTCACGACTGAATGCTGGGAA
GGGAGATGGGAAAATGCCCCCTCCAGAAAGAGCTGCCAACATCCCTCGAAGCATCTCCAGTGACGGGCGC
CCACTGGAAAGGAGGCTGTCTCCTGGTTCGGACATCTATGTGACAGTCTCATCCATGGCTTTGGCGAGAT
CCCAGTGCCGTAACTCTCCCAGCAACTTGTCTTCGTCCAGTGAGACTGGCTCTGGAGGTGGTACCTACAG
ACAAAAATCCATGCCCGAAGGGTTTGGGGTGAGCCGAAGATCCCCAGCTTCCATCGACAGGCAGAACACC
CAGTCGGATATAAGTGGCAGTGGAAAATCCACTCCCAGCTGGCAGAGAAGTGAGGACAGCCTTGCCGACC
AGATGGAGCCGACGTGCCATCTCCCAGCAGTATCGAAGGTACTGCCTGCTTTCCGAGAGAGCCCCAGTGG
GAGATTGATGCGGCAGGATCCAGTGGTTCACTTGTCTCCAAACAAACAAGGCCATTCTGACAGCCACTAC
TCCAGCCACTCCAGCAGCAACACGCTCTCCAGCAACGCCTCGAGTGCACACAGTGACGAGAAGTGGTACG
ATGGGGACCGCACGGAGTCCGACCTCAACAGCTACAACTACCTACAGGGCACGTCTGCCGACAGCGGGAT
TGACACCGCCTCCTACGGCCCCAGCCATGGCAGCACGGCCTCCCTGGGGGCCTCCACATCCTCACCTCGT
TCAGGGCCAGGCAAAGAAAAGGTGGCTCCCCTGTGGCACAGCTCCAGTGAAGTGCTCTCCCTGGCAGATC
GGACCTTAGAGACTGAGGGCCACGGCATGGACAGGAAAGCAGAGTCCTCCCTGAGCCTGGACATCCACAG
CAAGAGCCAGGGCGGGTCAAGCCCGCTGAGCAGGGAGAACAGCACCTTCAGCATAAATGATGCTGCGTCC
CACACCAGTACCATGAGCTCCCGACACTCTGCCAGCCCAGTGGTATTCTCCAGTGCCAGAAGTTCCCCCA
AAGAGGAGCTTCACCCCACCGCATCCTCCCAGCTCGCACCGTCCTTTTCCTCTTCTTCCTCATCCTCCTC
TGGACCTAGGACTTTCTACCCTCGCCAGGGCGCCACTAGCAAATATCTGATTGGATGGAAAAAGCCAGAA
GGAACCATTAACTCCGTGGGATTTATGGACACACGAAAGCGACATCAGAGTGATGGCAATGAGATAGCCC
ACACTAGGCTTCGAGCCTCAACCAGGGACCTGCAGGCATCCCCAAAGCCGACCTCCAAGTCTACCATTGA
GGAAGATCTAAAGAAACTCATCGACCTTGAGAGCCCAACTCCCGAATCCCAGAAGAATTTCAAGTTCCAT
GCACTGTCCTCCCCGCAGTCCCCGTTCCCCACTACCCCTACCTCCCGGCGGGCCCTGCACAGGACTCTGT
CAGATGAGAGCATTTACAGCAGCCAGAGGGAGCATTTCTTCACCTCCAGGGCTTCGCTTCTAGACCAAGC
CCTGCCCAACGATGTCCTCTTCAGCAGTACCTACCCATCTCTCCCCAAGTCACTTCCACTGAGGAGGCCA
TCTTACACGTTGGGAATGAAGTCATTGCATGGAGAGTTCTCTGCCTCGGACAGCTCCCTCACCGACATCC
AGGAGACCCGAAGGCAGCCTATCCCTGACCCTGGCCTGATGCCCCTGCCTGATGCAGCTTCAGATTTGGA
CTGGTCCAACCTAGTAGATGCCGCCAAAGCCTATGAGGTCCAGAGAGCCTCATTTTTTGCTGCTAGTGAT
GAAAACCATCGCCCCCTGAGCGCGGCCTCCAACAGTGACCAGCTGGAGGAGCAGGCCCTGGTCCAGATGA
AGTCCTACAGCAGTAAGGACCCCTCTCCCACTCTGGCTTCTAAGGTGGACCAGCTGGAAGGTATGCTGAA
AATGCTTCGAGAAGATTTGAAGAAGGAAAAAGAAGACAAGGCCCAGCTGCAGGCGGAAGTTGAGCACCTG
CGGGAGGACAACCTGAGGCTGCAGGAGGAGTCCCAGAACGCCTCGGACAAGCTGAAGAAGTTCACAGAGT
GGGTCTTCAACACCATAGACATGAGCTAG

Translation (1782 aa):
MTSLKRSQTERPVTADRASVVSTDGAPKVHTDDFYMRRFRSQNGSLGSSVMAAVGPPRSEGPHHITSTPG
VPKMGVRARIADWPPRKENVKESSRSSQEIETSSCLESLSSKGSPVSQGSSVSLNSNDSAMLKSIQNTLK
NKTGPAESMDSRFLMPEAYPSSPRKALRRIRQRSNSDITISELDVDSFDECISPTYKSGPSLHREYGSTS
SIDKQGTSGDSFFDLLKGYKDDRSDRGPTPTKLSDFLITGGGKGSGFSLDVIDGPISQRENLRLFKEREK
PLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSEDSVRPWTCPKCFAHYDVQSILFDLNEAIMNR
HNVIKRRNTTTGASAAAVASLVSGPLSHSASFSSPMGSTEDLNSKGSLGMDQGDDKSNELVMSCPYFRNE
IGGEGERKISLSKSNSGSFSGCESTSFESALSSHCTNAGVAVLEVPKESLMLHLDRVKRYTVEHVDLGAY
YYRKFFYQKEHWNYFGADENLGPVAVSIRREKPEDMKENGSPYNYRIIFRTSELMTLRGSVLEDAIPSTA
KHSTARGLPLKEVLEHVIPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYN
NESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIMFHVSTMLPYTPNNKQQL
LRKRHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRAHNPCTESVCYSVAVTRSRDVPSFGPPIPK
GVTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASK
KKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISSEFIVLIEQETKSVAFNCSCRDVIGWTSS
DTSLKIFYERGECVSVESFISGEDIKEIVRRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPY
GYAWQAGLRQGSRLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHDDCTPRRSCSETYRMPVMEYQM
NEGISYEFKFPFRNNNKWQRNASKGAHSPQVPSQLQSPMTSRLNAGKGDGKMPPPERAANIPRSISSDGR
PLERRLSPGSDIYVTVSSMALARSQCRNSPSNLSSSSETGSGGGTYRQKSMPEGFGVSRRSPASIDRQNT
QSDISGSGKSTPSWQRSEDSLADQMEPTCHLPAVSKVLPAFRESPSGRLMRQDPVVHLSPNKQGHSDSHY
SSHSSSNTLSSNASSAHSDEKWYDGDRTESDLNSYNYLQGTSADSGIDTASYGPSHGSTASLGASTSSPR
SGPGKEKVAPLWHSSSEVLSLADRTLETEGHGMDRKAESSLSLDIHSKSQGGSSPLSRENSTFSINDAAS
HTSTMSSRHSASPVVFSSARSSPKEELHPTASSQLAPSFSSSSSSSSGPRTFYPRQGATSKYLIGWKKPE
GTINSVGFMDTRKRHQSDGNEIAHTRLRASTRDLQASPKPTSKSTIEEDLKKLIDLESPTPESQKNFKFH
ALSSPQSPFPTTPTSRRALHRTLSDESIYSSQREHFFTSRASLLDQALPNDVLFSSTYPSLPKSLPLRRP
SYTLGMKSLHGEFSASDSSLTDIQETRRQPIPDPGLMPLPDAASDLDWSNLVDAAKAYEVQRASFFAASD
ENHRPLSAASNSDQLEEQALVQMKSYSSKDPSPTLASKVDQLEGMLKMLREDLKKEKEDKAQLQAEVEHL
REDNLRLQEESQNASDKLKKFTEWVFNTIDMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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