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Report for CCDS26024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26024.1 Public Mus musculus 12 Ttc9 23 108 98 CCDS HistoryNCBI Gene:69480Re-query CCDS DB by CCDS ID:26024.1Re-query CCDS DB by GeneID:69480See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036116.5 ENSMUSP00000048590.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036116.5Link to Ensembl Protein Viewer:ENSMUSP00000048590.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036116Re-query CCDS DB by Protein ID:ENSMUSP00000048590
Original member Current member EBI ENSMUST00000218362.1 ENSMUSP00000152038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218362.1Link to Ensembl Protein Viewer:ENSMUSP00000152038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218362Re-query CCDS DB by Protein ID:ENSMUSP00000152038
Original member Current member NCBI NM_001033149.3 NP_001028321.1 Accepted alive Link to Nucleotide Sequence:NM_001033149.3Link to Protein Sequence:NP_001028321.1Re-query CCDS DB by Nucleotide ID:NM_001033149Re-query CCDS DB by Protein ID:NP_001028321Link to BLAST:NP_001028321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028321.1 219 Q3V038 219 100% 0 0

Chromosomal Locations for CCDS 26024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81631405 81631801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81660566 81660748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81663516 81663595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGAGAGGAAGGGCTTGGCGGCCCGATCCTCGGGGAACCCTAGCCCGCCTGCGCTGGGTGAGGGACCGC
GGCCCGTGCCGCCGCCGTGCGTCCCGAGCGGCGGAGGAGCCCCGGAGCGGGGCCAGGCTGGAACGGCGGC
CGAGCCCGCGGAGCTTATCCGGCGCGCACACGAGTTCAAGAGCCAAGGGGCGCAGTGCTACAAGGACAAG
AAATTCCGCGAAGCCATCGGCAAATACCACCGGGCGTTGCTGGAGCTGAAGGGATTGCTGCCGTCACAAG
AGGAGCGGGACGCACGGCCAGCCTCCTCGGCAGGGGTTCCCAAATCCAGCCGCCTCTCAGAGGAGCAGAG
CAAGACGGTTGAAGCCATTGAGATCGACTGTTACAACAGCCTGGCAGCCTGCCTGCTCCAGGCCGAGCTG
GTAAATTATGAGCGAGTCAAGGAGTATTGCCTGAAGGTCCTGAAGAAGGAAGGAGAGAACTTCAAAGCTC
TTTACAGGTCTGGTGTGGCCTTCTATCATCTTGGGGACTATGATAAAGCTCTCTACTACCTAAAAGAAGC
AAGGACCCGACAACCCACAGACACCAATGTGATTCGGTACATCCAGCTGACGGAGATGAAGCTCAGCAGA
TGTTCCCAAAGGGAGAAAGAAGCCATGTAA

Translation (219 aa):
MERKGLAARSSGNPSPPALGEGPRPVPPPCVPSGGGAPERGQAGTAAEPAELIRRAHEFKSQGAQCYKDK
KFREAIGKYHRALLELKGLLPSQEERDARPASSAGVPKSSRLSEEQSKTVEAIEIDCYNSLAACLLQAEL
VNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLGDYDKALYYLKEARTRQPTDTNVIRYIQLTEMKLSR
CSQREKEAM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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