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Report for CCDS25968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25968.1 Public Mus musculus 12 Rtn1 23 108 98 CCDS HistoryNCBI Gene:104001Re-query CCDS DB by CCDS ID:25968.1Re-query CCDS DB by GeneID:104001See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078505.13 ENSMUSP00000077594.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078505.13Link to Ensembl Protein Viewer:ENSMUSP00000077594.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000078505Re-query CCDS DB by Protein ID:ENSMUSP00000077594
Original member Current member NCBI NM_153457.7 NP_703187.2 Accepted alive Link to Nucleotide Sequence:NM_153457.7Link to Protein Sequence:NP_703187.2Re-query CCDS DB by Nucleotide ID:NM_153457Re-query CCDS DB by Protein ID:NP_703187Link to BLAST:NP_703187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_703187.2 780 Q8K0T0 780 100% 0 0

Chromosomal Locations for CCDS 25968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72212535 72212577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72216771 72216829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72216915 72216961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72217419 72217488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72219257 72219395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72223332 72223539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72303657 72304418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72308156 72308929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72408311 72408551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGCCGCACCGCCGGATCTGCAAGATGAGCCGCTGTCTCTGGGTAGCCCCGGGTCCCAGTGGTTCGGGG
GCCGGGGGGATGGGGAAGACGAAGCGACGGCGGTGATGGGGGCCAGGCCAGCGCAGCAGGATGGGGAGCC
CGCCTGGGGGTCGGGCGCTGGAGCTGGGGTAACGTCGTCGCGGGAACTGTGCTCCGGCCCCGCCCGGTCG
CCTCCCGTCGCCATGGAAACTGCATCCACAGGTATGGCAGCTGTTCCCGATGCCCTCGACCACTCTCCCT
CTTCAACACTAAAAGATGGGGAAGGGGCATGTTACACATCCCTGATTTCTGACGTCTGCTATCCACCTCG
GGAGGACTCTGCATACTTTACTGGAATTCTTCAGAAGGAAAATGGTCACATCACCACTTCCGAGAGCCCT
GAGGAGCCGGAGACCCCCGGACCCTCGTTACCAGAAGTGCCCGGGATGGAGCCACAGGGCTTATTGAGTT
CTGATTCTGGAATAGAGATGACTCCTGCTGAGTCCACTGAGGTGAACAAGATCCTAGCTGACCCCCTAGA
CCAGATGAAGGCAGAAGCCTACAAATACATTGACATAACCAGGCCACAGGAGGCAAAAGGCCAGGAGGAG
CAACACCCTGGGCTAGAAGATAAAGACTTGGACTTTAAAGACAAGGACACTGAAGTCTCCACAAAAGCAG
AAGGGGTTCGAGCACCAAACCAGCCAGCTCCTGTGGAGGGGAAACTCATCAAGGACCACTTATTCGAAGA
ATCTACCTTTGCTCCTTACATAGATGAGCTCTCTGATGAGCAGCACAGGGTGTCTCTGGTCACTGCCCCT
GTCAAGATCACACTGACGGAGATCGAACCTCCTCTTATGACTGCCACACAAGAGACAATCCCCGAGAAGC
AAGACCTGTGTCTGAAGCCAAGTCCTGACACAGTGCCCACTGTCACTGTCTCAGAGCCTGAAGATGACAG
CCCAGGATCTGTCACGCCTCCATCTTCTGGAACAGAACCATCTGCTGCAGAGTCCCAGGGGAAAGGCAGC
GTCTCCGAGGATGAGTTGATTGCTGCCATTAAAGAAGCAAAGGGGTTATCATATGAAACCACCGAGAGTC
CAAGGCCAGTGGGCCAGGTGGCCGACAAACCCAAAACCAAGACCAGGTCTGGGCTGCCCACCATCCCCAG
TCCCCTCGACCAGGAGGCCAGCAGTGCCGAGTCCGGAGACTCAGAAATTGAGCTGGTGTCAGAGGACCCC
ATGGCCTCTGAGGATGCCCTGCCCTCTGGCTATGTGAGCTTCGGTCATGTGTCGGGCCCGCCCCCCTCTC
CTGCCTCTCCATCCATCCAGTACAGCATCCTGCGGGAGGAGCGTGAGGCCGAGCTGGACAGCGAGCTCAT
CATCGAGTCCTGTGATGCCTCCTCAGCCTCGGAGGAGAGCCCCAAGCGCGAGCAGGACTCGCCCCCGATG
AAACCGGGTGCCCTGGACGCCATCCGCGAGGAGACAGGCTCTCGGGCCACCGAAGAACGAGCGCCCAGCC
ACCAAGGCCCTGTGGAGCCCGACCCGATGCTCAGCTTTGCCCCCGCTGCCGCCCTCCAATCCCGCCCAGA
GCCATCGTCTGGAGATGGAGCCTCGGTCCCGGAGCCGCCCAGATCACAGCAGCAGAAGCCTGAAGAGGAA
GCTGTGAGTTCCAGTCAAAGTCCCACGGCCACCGAAATTCCTGGACCACTTGGTTCTGGCCTCATGCCCC
CTCTGCCTTTCTTCAACAAGCAAAAAGCTATTGACCTTCTGTACTGGCGGGACATCAAGCAGACTGGGAT
TGTGTTCGGGAGCTTCCTGCTGCTGCTCTTCTCCCTGACCCAGTTCAGCGTTGTGAGCGTCGTTGCCTAC
CTGGCCCTGGCCGCCCTCTCTGCCACCATCAGCTTCCGCATCTACAAGTCCGTTCTACAAGCTGTGCAGA
AAACAGATGAGGGTCACCCTTTCAAGGCCTACCTGGAGCTGGAGATCACCCTGTCCCAGGAGCAGATCCA
GAAGTACACAGACTGCCTGCAGCTGTATGTGAACAGCACTCTGAAGGAGCTACGGAGGCTTTTCCTGGTC
CAGGACCTGGTGGATTCCTTAAAATTTGCAGTCCTCATGTGGCTCCTGACCTACGTTGGCGCGCTCTTCA
ATGGCCTGACCCTGCTGCTTATGGCTGTGGTTTCGATGTTTACTCTACCTGTTGTGTACGTTAAGCACCA
GGCACAAGTTGACCAATATCTGGGACTTGTGAGGACTCACATAAACACCGTCGTGGCAAAGATCCAGGCT
AAAATCCCCGGCGCCAAGAGGCACGCTGAGTAG

Translation (780 aa):
MAAPPDLQDEPLSLGSPGSQWFGGRGDGEDEATAVMGARPAQQDGEPAWGSGAGAGVTSSRELCSGPARS
PPVAMETASTGMAAVPDALDHSPSSTLKDGEGACYTSLISDVCYPPREDSAYFTGILQKENGHITTSESP
EEPETPGPSLPEVPGMEPQGLLSSDSGIEMTPAESTEVNKILADPLDQMKAEAYKYIDITRPQEAKGQEE
QHPGLEDKDLDFKDKDTEVSTKAEGVRAPNQPAPVEGKLIKDHLFEESTFAPYIDELSDEQHRVSLVTAP
VKITLTEIEPPLMTATQETIPEKQDLCLKPSPDTVPTVTVSEPEDDSPGSVTPPSSGTEPSAAESQGKGS
VSEDELIAAIKEAKGLSYETTESPRPVGQVADKPKTKTRSGLPTIPSPLDQEASSAESGDSEIELVSEDP
MASEDALPSGYVSFGHVSGPPPSPASPSIQYSILREEREAELDSELIIESCDASSASEESPKREQDSPPM
KPGALDAIREETGSRATEERAPSHQGPVEPDPMLSFAPAAALQSRPEPSSGDGASVPEPPRSQQQKPEEE
AVSSSQSPTATEIPGPLGSGLMPPLPFFNKQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAY
LALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLV
QDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQA
KIPGAKRHAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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