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Report for CCDS25953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25953.1 Public Mus musculus 12 L2hgdh 23 108 98 CCDS HistoryNCBI Gene:217666Re-query CCDS DB by CCDS ID:25953.1Re-query CCDS DB by GeneID:217666See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021370.9 ENSMUSP00000021370.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021370.9Link to Ensembl Protein Viewer:ENSMUSP00000021370.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021370Re-query CCDS DB by Protein ID:ENSMUSP00000021370
Original member Current member NCBI NM_145443.2 NP_663418.1 Accepted alive Link to Nucleotide Sequence:NM_145443.2Link to Protein Sequence:NP_663418.1Re-query CCDS DB by Nucleotide ID:NM_145443Re-query CCDS DB by Protein ID:NP_663418Link to BLAST:NP_663418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663418.1 464 Q91YP0 464 100% 0 0

Chromosomal Locations for CCDS 25953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69692301 69692496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69699486 69699617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69701284 69701441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69702203 69702370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69705765 69705799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69707124 69707286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69712622 69712753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69721312 69721463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69722078 69722193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69724654 69724796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGTGGCCGACCCTGCGCTACGTAGGCGGTGTCTGCGGACTGGCCCGGTACTGCGTGGCTGGGGGCTTCC
TCCGCGCAAGTGGACCGGCGTCCGGGGTGCCCGGGCTACTGTGCGGGGGTGGCCGCAGAAGCTCCAGCAC
CAGCTCTTTTGATATAGTCATCGTTGGAGGTGGAATTGTGGGCCTTGCCTCTGCCAGAACGCTCATCCTG
AAACATCCTGGACTTTCGATTGGTGTGGTGGAAAAGGAGAAAGATTTAGCTCTTCACCAGACTGGACACA
ACAGCGGTGTCATACACAGTGGTATTTACTATAAACCAGAATCTCTGAAGGCTAAATTGTGTGTAGAAGG
CGCAGCCCTCATCTATGAGTACTGCAACCTCAAGGGAATTCCCTACAGGCAATGTGGCAAGCTAATAGTA
GCTGTTGAACAAGAAGAAATTCCCAGACTTCAGGCCTTGTATGAGAGAGGCCTGCAGAATGGAGTCGAAG
GCCTGAGGCTGATCCAGCAGGAGGATATAAAAAAGAAGGAGCCGTATTGCAGGGGTCTAATGGCTATTGA
TTGTCCATACACCGGCATTGTGAACTACCAACAGGTAGCTTTGTCATTTGCCCAGGATTTCCAAGAAGCA
GGTGGCTCTATCTTGAGAGATTTTGAGGTAAAAGGTATTGAAATAGCTAAAGAAAACTCTTCAAGAAGTA
AAGATGGCATGAACTATCCAATCGCTGTCAAGAACAGCAAGGGAAAGGAGATTCGGTGTCGATATGTTGT
CACATGTGCTGGTCTTTACTCTGACCGTATTTCAGAGTTGAGTGGCTGCAATCCTGACCCTCAAATTGTC
CCATTCCGGGGAGATTACCTGGTCTTAAAGCCAGAAAAGGGCTACCTTGTAAAAGGAAATATTTATCCGG
TCCCAGACAGCCGGTTTCCTTTCCTTGGAGTTCACTTTACGCCCAGGTTGGATGGCACTATTTGGCTAGG
GCCTAATGCAGTGCTTGCCTTTAAACGGGAAGGTTACAGACCCTTTGACTTCGATGCCAGAGATGTTATG
GAAGTAATTCTCAAAAGCGGCTTCATTAACCTGGTGTTCCAGCATTTCTCTTATGGAGTTAATGAAATGT
ATAAAGCCTGTTTTCTCAGTGAAACAGTGAAGCATCTTCAAAAGTTCATTCCTGAAATCACCATCAGCGA
TGTCCTTCGAGGTCCTGCTGGAGTACGGGCCCAGGCCCTGGACAGAGATGGAAATCTGGTAGAGGATTTT
GTGTTTGACGGAGGGACTGGCGAGATTGCAGACCGCGTCCTTCATGTGAGAAATGCGCCTTCGCCTGCTG
CCACTTCCTCCCTGGCAATTTCTAGAATGATAGCAGAGGAAGCACAGCAAAGGTTTAAGTTATGA

Translation (464 aa):
MWPTLRYVGGVCGLARYCVAGGFLRASGPASGVPGLLCGGGRRSSSTSSFDIVIVGGGIVGLASARTLIL
KHPGLSIGVVEKEKDLALHQTGHNSGVIHSGIYYKPESLKAKLCVEGAALIYEYCNLKGIPYRQCGKLIV
AVEQEEIPRLQALYERGLQNGVEGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVNYQQVALSFAQDFQEA
GGSILRDFEVKGIEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYSDRISELSGCNPDPQIV
PFRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLDGTIWLGPNAVLAFKREGYRPFDFDARDVM
EVILKSGFINLVFQHFSYGVNEMYKACFLSETVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDF
VFDGGTGEIADRVLHVRNAPSPAATSSLAISRMIAEEAQQRFKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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