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Report for CCDS25870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25870.1 Public Mus musculus 12 Pik3cg 23 108 98 CCDS HistoryNCBI Gene:30955Re-query CCDS DB by CCDS ID:25870.1Re-query CCDS DB by GeneID:30955See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053215.13 ENSMUSP00000062864.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053215.13Link to Ensembl Protein Viewer:ENSMUSP00000062864.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053215Re-query CCDS DB by Protein ID:ENSMUSP00000062864
Original member Current member EBI ENSMUST00000085469.5 ENSMUSP00000082596.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085469.5Link to Ensembl Protein Viewer:ENSMUSP00000082596.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085469Re-query CCDS DB by Protein ID:ENSMUSP00000082596
Original member Current member EBI ENSMUST00000156904.7 ENSMUSP00000123539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156904.7Link to Ensembl Protein Viewer:ENSMUSP00000123539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156904Re-query CCDS DB by Protein ID:ENSMUSP00000123539
Original member Current member EBI ENSMUST00000220366.1 ENSMUSP00000151400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220366.1Link to Ensembl Protein Viewer:ENSMUSP00000151400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220366Re-query CCDS DB by Protein ID:ENSMUSP00000151400
Original member Current member NCBI NM_001146200.2 NP_001139672.1 Accepted alive Link to Nucleotide Sequence:NM_001146200.2Link to Protein Sequence:NP_001139672.1Re-query CCDS DB by Nucleotide ID:NM_001146200Re-query CCDS DB by Protein ID:NP_001139672Link to BLAST:NP_001139672.1
Original member Current member NCBI NM_001146201.2 NP_001139673.1 Accepted alive Link to Nucleotide Sequence:NM_001146201.2Link to Protein Sequence:NP_001139673.1Re-query CCDS DB by Nucleotide ID:NM_001146201Re-query CCDS DB by Protein ID:NP_001139673Link to BLAST:NP_001139673.1
Original member Current member NCBI NM_020272.2 NP_064668.2 Accepted alive Link to Nucleotide Sequence:NM_020272.2Link to Protein Sequence:NP_064668.2Re-query CCDS DB by Nucleotide ID:NM_020272Re-query CCDS DB by Protein ID:NP_064668Link to BLAST:NP_064668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139672.1 1102 Q9JHG7 1102 100% 0 0
NP_001139673.1 1102 Q9JHG7 1102 100% 0 0
NP_064668.2 1102 Q9JHG7 1102 100% 0 0

Chromosomal Locations for CCDS 25870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 32176578 32176856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32192080 32192237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32193599 32193710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32194694 32194824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32195619 32195709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32197185 32197331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32199088 32199191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32200500 32200725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32200835 32200900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32203992 32205986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3309 nt):
ATGGAGCTGGAGAACTATGAACAACCGGTGGTTCTAAGAGAGGACAACCTCCGCCGGCGCCGGAGGATGA
AGCCACGCAGCGCAGCAGGCAGCCTGTCTTCCATGGAGCTCATCCCCATTGAGTTCGTACTGCCCACCAG
CCAGCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACAGATG
AAAGCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGTTCTACCACCGATTGGGCCCGG
ACCAATTCCTCCTGCTCTACCAGAAGAAAGGACAATGGTATGAGATCTATGACAGGTACCAAGTGGTGCA
GACCCTAGACTGCCTGCATTACTGGAAGTTGATGCACAAGAGCCCTGGCCAGATCCACGTGGTACAGCGA
CACGTACCTTCTGAGGAGACCTTGGCTTTCCAGAAGCAGCTCACCTCCCTGATTGGCTATGACGTCACTG
ACATCAGCAATGTGCACGATGATGAGCTAGAGTTCACTCGCCGCCGTCTGGTTACGCCCCGCATGGCTGA
AGTGGCTGGCCGGGATGCCAAACTCTATGCTATGCACCCTTGGGTAACGTCCAAACCTCTCCCAGACTAC
CTGTCAAAAAAGATTGCCAACAACTGCATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCA
AGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAAGTC
CCTAATGAATATCTCAGAAAGTCAAAGTGAGCAGGATTTTGTATTGCGGGTTTGTGGCCGCGATGAGTAC
CTGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAATAC
ACCTGGTGCTCGACACGCCTCCAGACCCAGCCCTTGATGAGGTGAGGAAGGAAGAATGGCCGCTGGTGGA
TGACTGCACTGGAGTCACCGGCTACCACGAGCAGCTGACCATCCATGGCAAGGACCACGAGAGTGTGTTC
ACAGTGTCTTTGTGGGACTGCGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGATATCCCTGTCCTGC
CTCGGAACACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAG
GAGAACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGGAATGTGTGGCTGGAGTTTGGCATCAAAATC
AAAGACTTGCCCAAAGGGGCTCTATTGAACCTACAGATCTACTGCTGCAAAACCCCATCACTGTCCAGCA
AGGCTTCTGCAGAGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCTATTACGTGAACTTGCT
GTTAATAGACCACCGTTTCCTCCTCCGCCACGGGGACTATGTGCTCCACATGTGGCAGATATCTGGCAAG
GCAGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTCAA
TGTCCATTTCCATCCTGCTGGACAATTACTGTCACCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGA
CCCAGAGGGAGACAGGGTTCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATAGCC
ACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCATTTTCGATATGAAAGCCTGA
AGCATCCGAAGGCTTACCCTAAGCTATTCAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGCCAAAAC
GTACCAGCTGTTAGCCAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTTGGCTTAACCATGCAGCTC
CTGGACTGCAACTTTTCAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTTAGAGGACG
ATGACGTTTTACATTACCTTCTCCAGCTGGTACAGGCTGTGAAATTTGAACCGTACCACGACAGTGCGCT
GGCCAGATTCCTGCTGAAGCGTGGCTTGAGGAACAAAAGAATCGGTCACTTCTTGTTCTGGTTCCTGCGA
AGTGAGATCGCACAGTCCAGACACTATCAGCAGAGGTTCGCTGTGATCCTGGAGGCGTACCTGCGAGGCT
GTGGCACAGCCATGTTGCAGGACTTCACACAGCAGGTCCATGTGATTGAGATGTTACAGAAAGTCACCAT
TGATATTAAATCGCTCTCGGCAGAGAAGTATGACGTCAGTTCCCAAGTTATTTCACAGCTTAAGCAAAAG
CTTGAAAGCCTTCAGAACTCCAATCTCCCCGAGAGCTTTAGAGTTCCCTATGATCCTGGACTAAAAGCCG
GTACCCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTGGCTTGAGTTTAAGTG
TGCTGATCCCACAGTCCTATCCAACGAAACCATTGGAATCATCTTTAAACATGGTGATGATCTGCGCCAA
GACATGTTGATCTTGCAGATTCTACGCATCATGGAGTCCATTTGGGAGACTGAATCTCTGGACCTGTGCC
TTCTGCCTTACGGTTGCATCTCAACTGGTGACAAAATAGGAATGATCGAGATTGTAAAGGATGCCACAAC
GATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAATCACTGG
CTCAAGGAAAAATGTCCTATTGAAGAAAAGTTTCAGGCCGCAGTGGAAAGGTTTGTTTACTCCTGTGCAG
GCTACTGTGTGGCCACATTTGTTCTTGGGATCGGTGACAGGCACAACGACAACATTATGATCTCAGAGAC
AGGAAACCTATTTCATATAGACTTCGGACACATTCTTGGGAATTACAAGAGTTTCCTGGGCATCAATAAA
GAGAGAGTGCCCTTCGTCCTAACCCCAGACTTCTTGTTTGTGATGGGATCTTCTGGAAAAAAGACAAGTC
CACACTTCCAGAAATTCCAGGATGTCTGTGTTAGAGCTTACCTAGCTCTTCGCCATCACACAAACCTGTT
GATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATAT
ATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTTCCTTGATCAGATCGAAG
TCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGG
AGAAAAGCACTCCGCTTGA

Translation (1102 aa):
MELENYEQPVVLREDNLRRRRRMKPRSAAGSLSSMELIPIEFVLPTSQRISKTPETALLHVAGHGNVEQM
KAQVWLRALETSVAAEFYHRLGPDQFLLLYQKKGQWYEIYDRYQVVQTLDCLHYWKLMHKSPGQIHVVQR
HVPSEETLAFQKQLTSLIGYDVTDISNVHDDELEFTRRRLVTPRMAEVAGRDAKLYAMHPWVTSKPLPDY
LSKKIANNCIFIVIHRGTTSQTIKVSADDTPGTILQSFFTKMAKKKSLMNISESQSEQDFVLRVCGRDEY
LVGETPLKNFQWVRQCLKNGDEIHLVLDTPPDPALDEVRKEEWPLVDDCTGVTGYHEQLTIHGKDHESVF
TVSLWDCDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFAEEVLWNVWLEFGIKI
KDLPKGALLNLQIYCCKTPSLSSKASAETPGSESKGKAQLLYYVNLLLIDHRFLLRHGDYVLHMWQISGK
AEEQGSFNADKLTSATNPDKENSMSISILLDNYCHPIALPKHRPTPDPEGDRVRAEMPNQLRKQLEAIIA
TDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREIWDQSALDVGLTMQL
LDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLR
SEIAQSRHYQQRFAVILEAYLRGCGTAMLQDFTQQVHVIEMLQKVTIDIKSLSAEKYDVSSQVISQLKQK
LESLQNSNLPESFRVPYDPGLKAGTLVIEKCKVMASKKKPLWLEFKCADPTVLSNETIGIIFKHGDDLRQ
DMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAQIQQSTVGNTGAFKDEVLNHW
LKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISETGNLFHIDFGHILGNYKSFLGINK
ERVPFVLTPDFLFVMGSSGKKTSPHFQKFQDVCVRAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEY
IRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLVLGIKQGEKHSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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