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Report for CCDS25822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25822.1 Public Mus musculus 12 Lpin1 23 108 98 CCDS HistoryNCBI Gene:14245Re-query CCDS DB by CCDS ID:25822.1Re-query CCDS DB by GeneID:14245See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067124.5 ENSMUSP00000070583.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067124.5Link to Ensembl Protein Viewer:ENSMUSP00000070583.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067124Re-query CCDS DB by Protein ID:ENSMUSP00000070583
Original member Current member EBI ENSMUST00000111067.9 ENSMUSP00000106696.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111067.9Link to Ensembl Protein Viewer:ENSMUSP00000106696.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111067Re-query CCDS DB by Protein ID:ENSMUSP00000106696
Original member Current member EBI ENSMUST00000221297.1 ENSMUSP00000152285.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221297.1Link to Ensembl Protein Viewer:ENSMUSP00000152285.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221297Re-query CCDS DB by Protein ID:ENSMUSP00000152285
Original member Current member NCBI NM_001355598.1 NP_001342527.1 Accepted alive Link to Nucleotide Sequence:NM_001355598.1Link to Protein Sequence:NP_001342527.1Re-query CCDS DB by Nucleotide ID:NM_001355598Re-query CCDS DB by Protein ID:NP_001342527Link to BLAST:NP_001342527.1
Original member Current member NCBI NM_015763.4 NP_056578.2 Accepted alive Link to Nucleotide Sequence:NM_015763.4Link to Protein Sequence:NP_056578.2Re-query CCDS DB by Nucleotide ID:NM_015763Re-query CCDS DB by Protein ID:NP_056578Link to BLAST:NP_056578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342527.1 924 Q91ZP3-1 924 99.7835% 0 2
NP_056578.2 924 Q91ZP3-1 924 99.7835% 0 2

Chromosomal Locations for CCDS 25822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16538413 16538572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16540914 16541017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16541714 16541828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16544644 16544796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16546721 16546807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16547486 16547634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16548877 16549003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16553949 16554028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16558409 16558501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16560982 16561051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16562363 16562456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16563622 16563812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16564526 16564619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16565391 16565697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16568390 16568519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16571164 16571262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16573660 16573785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16576948 16577255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16579882 16579977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16580704 16580895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2775 nt):
ATGAATTACGTGGGGCAGCTGGCCGGCCAGGTGTTTGTGACGGTGAAGGAGCTCTACAAGGGACTGAACC
CCGCCACGCTGTCGGGATGCATCGACATCATTGTCATCCGGCAGCCCAATGGCAGTCTGCAGTGCTCCCC
TTTCCACGTCCGCTTCGGCAAGATGGGTGTCCTCCGCTCCCGAGAGAAAGTGGTGGACATAGAAATCAAT
GGGGAGTCCGTGGATTTGCACATGAAGTTGGGAGACAACGGAGAAGCATTTTTTGTTCAAGAGACTGACA
ACGATCAGGAAATCATCCCCATGTACCTGGCCACGTCCCCCATCCTGTCAGAAGGAGCTGCGAGAATGGA
AAGCCAGCTGAAGAGGAACTCTGTAGACAGAATCAGGTGCCTGGATCCCACTACAGCTGCCCAGGGCCTG
CCTCCCAGCGACACCCCATCCACTGGTTCTCTGGGGAAGAAGAGAAGGAAAAGGAGGAGGAAGGCCCAGT
TGGACAATCTCAAAAGAGATGACAATGTCAACACATCTGAGGATGAGGACATGTTTCCCATAGAGATGAG
CTCGGATGAGGACACAGCACCGATGGATGGAAGCAGAACTCTTCCTAATGATGTACCACCATTCCAAGAT
GATATTCCTAAGGAAAACTTCCCCTCGATTTCAACGTACCCCCAGTCAGCATCGTATCCCAGTTCGGACA
GAGAATGGTCCCCCAGCCCCAGCAGCCTGGTAGATTGCCAGAGGACTCCCCCTCACCTGGCCGAGGGAGT
TCTCTCTAGCTCTTGTCCTCTGCAGTCTTGCCACTTCCATGCTTCGGAAAGTCCTTCAGGCTCCCGGCCC
TCAACACCAAAAAGTGACTCTGAGCTGGTCAGTAAGTCTGCAGACAGGTTGACGCCAAAGAATAACCTGG
AAATGCTCTGGCTGTGGGGTGAATTGCCACAGGCTGCAAAGTCCTCTTCTCCACACAAGATGAAAGAGTC
CAGCCCCTTAGGGAGCCGGAAGACTCCTGATAAAATGAATTTTCAGGCCATTCACAGCGAGTCTTCAGAT
ACTTTTAGTGACCAGTCGCCAACAATGGCCCGGGGACTGCTCATCCACCAGAGTAAGGCCCAGACGGAAA
TGCAGTTTGTGAACGAGGAGGATCTCGAGTCCTTGGGGGCGGCAGCCCCACCTTCACCCGTGGCCGAAGA
GCTCAAGGCCCCATATCCCAACACCGCACAGTCGTCGAGCAAGACAGATTCCCCTTCCAGGAAGAAAGAT
AAACGGAGCCGACACCTTGGAGCTGATGGTGTTTATCTGGACGACCTCACGGACATGGACCCTGAAGTGG
CAGCCCTGTATTTCCCCAAGAATGGGGATCCTGGTGGGCTCCCCAAACAAGCCAGTGACAACGGAGCCAG
GTCAGCCAACCAGTCACCACAGTCTGTGGGAGGCTCGGGCATCGACAGTGGTGTGGAGAGCACCTCCGAC
AGCCTGAGGGACCTGCCATCCATCGCCATCTCCCTCTGCGGTGGCCTCAGTGACCACAGAGAGATCACCA
AAGATGCATTTTTGGAACAAGCCGTGTCATATCAGCAATTTGCCGACAACCCTGCTATCATCGATGACCC
CAACCTCGTGGTCAAGGTTGGCAATAAGTATTACAACTGGACAACAGCAGCTCCTCTACTTCTGGCGATG
CAGGCTTTCCAGAAACCTTTGCCAAAGGCCACTGTGGAATCCATCATGAGAGATAAGATGCCCAAAAAGG
GAGGAAGATGGTGGTTTTCCTGGAGAGGAAGAAATGCCACAATCAAAGAGGAAAGCAAGCCTGAACAGTG
CCTGACTGGGAAAGGCCACAATACCGGAGAGCAGCCTGCCCAGCTTGGCCTGGCCACCAGGATAAAGCAT
GAGTCATCCTCCAGTGATGAAGAGCACGCAGCCGCCAAGCCATCAGGTTCGAGCCACCTCTCTCTCTTGT
CCAACGTCAGCTACAAAAAGACCCTGCGGCTCACGTCGGAGCAGCTGAAAAGCTTGAAGTTGAAGAACGG
CCCCAATGATGTGGTGTTCAGTGTCACTACCCAGTACCAGGGCACCTGTCGCTGCGAGGGCACCATCTAC
CTGTGGAATTGGGACGACAAAGTCATCATCTCAGATATCGATGGGACCATCACAAGATCTGATACTCTTG
GTCACATTTTGCCCACGCTGGGAAAGGATTGGACTCACCAGGGCATTGCAAAGCTGTACCACAAAGTAAG
CCAGAATGGCTACAAGTTTCTCTATTGTTCGGCACGTGCCATTGGGATGGCGGACATGACGAGGGGCTAC
CTGCACTGGGTCAACGAGAGGGGCACGGTGCTTCCACAGGGCCCGCTTCTGCTCAGCCCGAGCAGCCTCT
TCTCCGCCTTGCACAGAGAAGTGATTGAAAAGAAGCCAGAAAAGTTCAAAGTCCAGTGTTTGACAGACAT
CAAGAACCTGTTTTTCCCAAACACAGAACCCTTCTATGCTGCTTTTGGGAACCGGCCTGCTGATGTGTAT
TCCTACAAGCAAGTGGGAGTGTCCCTGAATAGGATCTTCACTGTGAACCCCAAGGGTGAGCTGGTGCAGG
AGCATGCCAAGACCAACATCAGCTCGTACGTGCGGCTCTGCGAAGTGGTCGATCACGTCTTCCCATTGCT
AAAGAGAAGCCATTCCTGTGACTTCCCCTGTTCAGACACTTTCAGTAACTTCACCTTTTGGAGAGAGCCA
CTGCCACCTTTTGAAAACCAGGACATGCATTCAGCCTCAGCTTGA

Translation (924 aa):
MNYVGQLAGQVFVTVKELYKGLNPATLSGCIDIIVIRQPNGSLQCSPFHVRFGKMGVLRSREKVVDIEIN
GESVDLHMKLGDNGEAFFVQETDNDQEIIPMYLATSPILSEGAARMESQLKRNSVDRIRCLDPTTAAQGL
PPSDTPSTGSLGKKRRKRRRKAQLDNLKRDDNVNTSEDEDMFPIEMSSDEDTAPMDGSRTLPNDVPPFQD
DIPKENFPSISTYPQSASYPSSDREWSPSPSSLVDCQRTPPHLAEGVLSSSCPLQSCHFHASESPSGSRP
STPKSDSELVSKSADRLTPKNNLEMLWLWGELPQAAKSSSPHKMKESSPLGSRKTPDKMNFQAIHSESSD
TFSDQSPTMARGLLIHQSKAQTEMQFVNEEDLESLGAAAPPSPVAEELKAPYPNTAQSSSKTDSPSRKKD
KRSRHLGADGVYLDDLTDMDPEVAALYFPKNGDPGGLPKQASDNGARSANQSPQSVGGSGIDSGVESTSD
SLRDLPSIAISLCGGLSDHREITKDAFLEQAVSYQQFADNPAIIDDPNLVVKVGNKYYNWTTAAPLLLAM
QAFQKPLPKATVESIMRDKMPKKGGRWWFSWRGRNATIKEESKPEQCLTGKGHNTGEQPAQLGLATRIKH
ESSSSDEEHAAAKPSGSSHLSLLSNVSYKKTLRLTSEQLKSLKLKNGPNDVVFSVTTQYQGTCRCEGTIY
LWNWDDKVIISDIDGTITRSDTLGHILPTLGKDWTHQGIAKLYHKVSQNGYKFLYCSARAIGMADMTRGY
LHWVNERGTVLPQGPLLLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVY
SYKQVGVSLNRIFTVNPKGELVQEHAKTNISSYVRLCEVVDHVFPLLKRSHSCDFPCSDTFSNFTFWREP
LPPFENQDMHSASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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