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Report for CCDS25815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25815.1 Public Mus musculus 12 Smc6 23 108 98 CCDS HistoryNCBI Gene:67241Re-query CCDS DB by CCDS ID:25815.1Re-query CCDS DB by GeneID:67241See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020931.5 ENSMUSP00000020931.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020931.5Link to Ensembl Protein Viewer:ENSMUSP00000020931.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020931Re-query CCDS DB by Protein ID:ENSMUSP00000020931
Original member Current member NCBI NM_025695.4 NP_079971.2 Accepted alive Link to Nucleotide Sequence:NM_025695.4Link to Protein Sequence:NP_079971.2Re-query CCDS DB by Nucleotide ID:NM_025695Re-query CCDS DB by Protein ID:NP_079971Link to BLAST:NP_079971.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079971.2 1097 Q924W5-1 1097 100% 0 0

Chromosomal Locations for CCDS 25815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11271734 11271871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11273994 11274111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11276260 11276365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11279605 11279741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11280341 11280402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11282360 11282440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11283071 11283172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11285098 11285217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11285311 11285409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11289128 11289274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11289637 11289725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11289892 11290056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11290713 11290891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11291526 11291730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11294485 11294599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11294923 11295083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11297150 11297285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11298262 11298342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11299259 11299429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11300571 11300708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11301522 11301667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11306078 11306203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11309199 11309304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11314607 11314759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11316619 11316716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11317770 11317884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3294 nt):
ATGGCCAAAAGAAAGGAAGAAAATTTCTGCTCTCCTGAAAATGCTAAAAGACCAAGACAAGAAGAACTGG
AAGATTTTGATAAAGATGGAGATGAAGATGAATGTACAATTTCTTTCACGAATGGAACATCTACTTTGAC
TGCAGCAGAAGTTGGAATAATTGAGAGTATTCAGCTAAGAAATTTCATGTGTCATTCAATGCTTGGACCT
TTTAAGTTTGGTTCTAACGTCAACTTTGTTGTTGGCAATAATGGAAGTGGGAAGAGTGCTGTGCTCACCG
CACTCATAGTTGGTCTTGGTGGAAAAGCAGTTGCTACTAACAGAGGGTCCTCTTTAAAAGGCTTTGTGAA
AGCTGGACAGAACTCAGCAGATATCTCAATAACATTAAGGAACAGAGGAGATGATGCCTTCAGAGCAAAT
GTGTATGGTGACTCTATAGTTGTGCAGCAACACATTAGCGTGGATGGAAGTCGATCTTACAAACTAAAAA
GTGAAAAAGGCACCGTGGTTTCTACTAGGAAAGAAGAGCTGATTGCAATTCTTGACCATTTTAACATCCA
GGTGGATAATCCGGTTTCTGTTTTAACACAAGAGATGAGCAAGCAGTTCTTACAGTCCAAAAATGAGGGA
GACAAATACAAATTCTTCATGAAAGCAACCCAGCTCGAACAGATGAAGGAAGATTATTCATATATTATGG
AAACAAAAGAAAGAACAAAGGAACAAATAAATCAGGGAGAAGAGCGACTTACTGAACTAAAACGCCAGTG
TTTGGAGAAAGAGGAACGTTTTCAAAATATTGCTGGTTTAAGTACAATGAAGACTAATTTAGAGTACTTG
AAACATGAAATGGCTTGGGCAGTGGTCAATGAAATTGAAAAACAATTGAATGCTATTCGAGACAATATCA
AAATTGGAGAAGAACGTGCTGCAAAACTTGACAGGAAAATGGAAGAGCAGCAGGTCAGACTTAATGATGC
AGAAAAAAAGTACAAAGATATACAAGATAAACTAGAAAAAATTAGTGAAGAGACAAATGCACGAGCACCA
GAATGTATGGCATTGAAAACAGATGTCATTGCAAGGACAAGAGCCTTTAATGACGCTGAGGTTTTATATA
ACCGTTCCCTAAATGAATATAAAGCATTAAAAAAAGATGGTGAACAGCTTTGTAAAAGAATTGAAGAACT
GAAGAAAAGTACTGATCAGTCATTAGAACCAGAGCGATTGGAAAGGCAAAAAAGGATCTGCTGGTTAAAA
GAGAAAGTCAAGGCCTTACAGGATCAGGAACATACAGTCAATCAGGAGGCTGAGCAGTTTGAGCAAGCCA
TAGAAAAGGACAAGCAAGAGCATGGCCGAGTTAGGAAAGAAGATATAGAAGTGAGACATGCACTCAACTA
TAATCAGAGACAATTGAAAGAACTGAAAGATAGTAAAACTGATCGACTAAAAAGATTTGGTCCTCATGTT
CCAGCTCTTCTGGAAGCAATAGATGATGCTTACAGACGGAGACAATTTACCCATAAACCTATCGGCCCTT
TAGGTGCTTGCATTCATCTACGGGACCCTGAACTTGCTTTGGCCATTGAATCTTGCTTAAAAGGACTTCT
GCAAGCCTATTGTTGCCATAATCATGCTGATGAGAGAGTACTTCAGTCTTTGATGAAAAAATTTTATCCA
CCAGGGACCTCTCGGCCACAGATAATTGTGTCTGAGTTTCGGGATGAGGTATATGATGTGAGACTCAGAG
CTGCTTACCATCCAGAGTTTCCAACTGTTCTGACAGCTTTAGAAATAGACAATGCTGTTGTGGCAAACAG
CCTGATTGACATGCGGAGCATAGAGACAGTGCTGCTGATCAAAAATAATTCTGTGGCTCGTGCAGTCATG
CAATCCCAAAAGCCACCCAAAAATTGTAGAGAAGCTTTTACTGCTGATGGTGATCAAGTGTTTGCAGGAC
GTTATTATTCATCTGAAAGTACAAGACCCAAGTTTCTAAGCAGAGATGTGGATTCTGAAATAAGTGACTT
GGAGACTGAGATTGAAAATAAAAAGGGCCACATAATAACCCTTCAGCAGCGTCTGTCTGCGCTTGAGAAG
GATATCAAACGCAATGAAGAACTTCTTAAAAGGTGCCAACTACATTATAAAGAAATAAAGATGAAAATAA
GAAAAAATATTTCTGAAATTCGGGAACTTGAGAATATAGAAGAACACCAATCTGTAGATATTGCAACCTT
GGAAGATGAAGCTGAAGAAAATAAAATAAAAATGCAAATGGTGGAGAAAAATATGGAACAACAAAAAGAA
AACATGGAGAATCTTAAAAGTCTAAAAATTGAAGCAGAAAATAAGTATGATACAATTAAATTGAAGATTA
ATCAGCTATCAGAGCTAGCGGATCCACTTAAGGATGAGTTAAATCTTGCTGACTCTGAAGTGGATAGCCA
GAAACGAGGAAAGCAGCACTATGAGGATAAACAGAAAGAGCATTTGGATACCTTAAATAAAAAGAGACGA
GAGCTTGACATGAAGGAAAAGGAGTTACAGGAGAAAATGTCACAGGCAAGACAGATCTGCCCAGAACGGA
TAGAAGTAAAAAAATCTGCATCAATTCTAGACAAAGAAATAAATCGATTAAGACAAAAAATTCAGGCAGA
ACATGCCAGTCATGGAGATCGGGAGGAAATAATGAAGCAGTATCAAGAAGCAAGAGAAACCTACCTTGAT
CTGGATAATAAAGTAAGGACTTTAAGAAGGTTCATTAAATTGCTAGAAGAAATAATGACCCATAGGTACA
AAACATACCAACAATTTAGAAGGTGTTTGACATTACGATGCAAATTATACTTTGACAACTTATTATCTCA
GCGTGCTTATTGTGGAAAAATGAATTTTGATCACAAGAATGAAACTCTTAGTATAACAGTTCAGCCCGGA
GAGGGGAACAAAGCCTCCTTCAATGACATGCGTGCTTTGTCCGGCGGTGAGCGCTCTTTCTCCACCGTGT
GCTTCATCCTTTCCCTGTGGTCCATTGCTGAATCACCTTTCAGATGCCTGGATGAGTTTGATGTCTACAT
GGATATGGTTAATAGGAGAATTGCGATGGACATGATCCTTAAGATGGCAGATTCCCAACGTTTTAGACAA
TTTATCTTGCTTACCCCTCAAAGCATGAGCTCCCTTCCCTCAAGTAAACTGATTAGAATTCTTCGAATGT
CTGACCCTGAAAGAGGGCAAACCACACTGCCCTTCCGACCTGTGACTCAAGAGGAAGATGACAGTGCAAG
TTGA

Translation (1097 aa):
MAKRKEENFCSPENAKRPRQEELEDFDKDGDEDECTISFTNGTSTLTAAEVGIIESIQLRNFMCHSMLGP
FKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLKGFVKAGQNSADISITLRNRGDDAFRAN
VYGDSIVVQQHISVDGSRSYKLKSEKGTVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEG
DKYKFFMKATQLEQMKEDYSYIMETKERTKEQINQGEERLTELKRQCLEKEERFQNIAGLSTMKTNLEYL
KHEMAWAVVNEIEKQLNAIRDNIKIGEERAAKLDRKMEEQQVRLNDAEKKYKDIQDKLEKISEETNARAP
ECMALKTDVIARTRAFNDAEVLYNRSLNEYKALKKDGEQLCKRIEELKKSTDQSLEPERLERQKRICWLK
EKVKALQDQEHTVNQEAEQFEQAIEKDKQEHGRVRKEDIEVRHALNYNQRQLKELKDSKTDRLKRFGPHV
PALLEAIDDAYRRRQFTHKPIGPLGACIHLRDPELALAIESCLKGLLQAYCCHNHADERVLQSLMKKFYP
PGTSRPQIIVSEFRDEVYDVRLRAAYHPEFPTVLTALEIDNAVVANSLIDMRSIETVLLIKNNSVARAVM
QSQKPPKNCREAFTADGDQVFAGRYYSSESTRPKFLSRDVDSEISDLETEIENKKGHIITLQQRLSALEK
DIKRNEELLKRCQLHYKEIKMKIRKNISEIRELENIEEHQSVDIATLEDEAEENKIKMQMVEKNMEQQKE
NMENLKSLKIEAENKYDTIKLKINQLSELADPLKDELNLADSEVDSQKRGKQHYEDKQKEHLDTLNKKRR
ELDMKEKELQEKMSQARQICPERIEVKKSASILDKEINRLRQKIQAEHASHGDREEIMKQYQEARETYLD
LDNKVRTLRRFIKLLEEIMTHRYKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSITVQPG
EGNKASFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDMILKMADSQRFRQ
FILLTPQSMSSLPSSKLIRILRMSDPERGQTTLPFRPVTQEEDDSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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