NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25719.1 Public Mus musculus 11 Nptx1 23 108 98 CCDS HistoryNCBI Gene:18164Re-query CCDS DB by CCDS ID:25719.1Re-query CCDS DB by GeneID:18164See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026670.4 ENSMUSP00000026670.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026670.4Link to Ensembl Protein Viewer:ENSMUSP00000026670.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026670Re-query CCDS DB by Protein ID:ENSMUSP00000026670
Original member Current member NCBI NM_008730.2 NP_032756.1 Accepted alive Link to Nucleotide Sequence:NM_008730.2Link to Protein Sequence:NP_032756.1Re-query CCDS DB by Nucleotide ID:NM_008730Re-query CCDS DB by Protein ID:NP_032756Link to BLAST:NP_032756.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032756.1 432 Q62443 432 100% 0 0

Chromosomal Locations for CCDS 25719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119542473 119542694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119543182 119543361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119544592 119544836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119546652 119546859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119547146 119547589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGCTGGCCGGCCGCGCCGCACGCACCTGTGCGCTGCTCGCCCTCTGCCTCCTGGGCAGTGGGGCCCAAG
ATTTCGGGCCGACCCGCTTCATCTGCACTTCGGTGCCGGTGGATGCAGACATGTGTGCCGCGTCCGTGGC
TGCGGGCGGCGCGGAGGAGCTTCGGAGCAACGTGCTGCAGCTCCGCGAGACCGTGCTGCAGCAGAAGGAG
ACCATCCTCAGCCAGAAGGAGACCATCAGGGAGCTGACCACCAAGCTTGGCCGCTGCGAGAGCCAGAGCA
CCCTGGACTCGGGTCCCGGCGAGGCCAGGTCGGGAGGCGGCCGCAAGCAGCCTGGCTCGGGCAAGAACAC
GATGGGCGACCTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTC
AAAACCCGACTGGAGAACCTCGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGG
ATCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTCTCGGGTGAACACTCTGGAGGAGGG
GAAAGGGGGCCCCAAGAACGACACAGAGGAAAGGGCCAAGATCGAGAGCGCCTTGACCTCCCTACACCAA
CGGATCAGCGAGCTGGAGAAAGGTCAGAAAGACAATCGCCCCGGAGACAAGTTTCAGCTGACATTCCCAC
TGCGGACCAACTACATGTATGCCAAGGTGAAGAAGAGCCTGCCAGAGATGTATGCCTTCACCGTGTGCAT
GTGGCTCAAGTCCAGTGCGGCGCCTGGAGTGGGCACACCCTTCTCTTATGCTGTGCCTGGGCAGGCCAAC
GAACTGGTCCTCATCGAGTGGGGCAACAACCCCATGGAGATACTCATTAATGACAAGGTGGCCAAGCTGC
CGTTTGTAATCAACGATGGCAAATGGCATCACATCTGTGTCACCTGGACCACCCGGGATGGGGTCTGGGA
GGCCTATCAGGATGGCACCCAGGGTGGCAATGGAGAGAACTTGGCACCCTATCACCCCATCAAACCACAG
GGCGTGCTGGTGCTGGGTCAGGAACAGGACACTCTAGGTGGAGGGTTTGATGCCACCCAAGCATTTGTGG
GTGAGCTAGCCCATTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGAGGTGTACAACCTGGCCACCTG
CAGCAGCAAGGCTCTCTCTGGCAATGTCATCGCCTGGGCTGAGTCCCAGATCGAGATCTTTGGTGGAGCC
ACCAAGTGGACATTCGAGGCTTGTCGCCAGATCAACTGA

Translation (432 aa):
MLAGRAARTCALLALCLLGSGAQDFGPTRFICTSVPVDADMCAASVAAGGAEELRSNVLQLRETVLQQKE
TILSQKETIRELTTKLGRCESQSTLDSGPGEARSGGGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQSL
KTRLENLEQYSRLNSSSQTNSLKDLLQSKIDDLERQVLSRVNTLEEGKGGPKNDTEERAKIESALTSLHQ
RISELEKGQKDNRPGDKFQLTFPLRTNYMYAKVKKSLPEMYAFTVCMWLKSSAAPGVGTPFSYAVPGQAN
ELVLIEWGNNPMEILINDKVAKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGNGENLAPYHPIKPQ
GVLVLGQEQDTLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSSKALSGNVIAWAESQIEIFGGA
TKWTFEACRQIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH