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Report for CCDS25713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25713.1 Public Mus musculus 11 Gaa 23 108 98 CCDS HistoryNCBI Gene:14387Re-query CCDS DB by CCDS ID:25713.1Re-query CCDS DB by GeneID:14387See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026666.12 ENSMUSP00000026666.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026666.12Link to Ensembl Protein Viewer:ENSMUSP00000026666.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026666Re-query CCDS DB by Protein ID:ENSMUSP00000026666
Original member Current member EBI ENSMUST00000106259.8 ENSMUSP00000101866.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106259.8Link to Ensembl Protein Viewer:ENSMUSP00000101866.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106259Re-query CCDS DB by Protein ID:ENSMUSP00000101866
Original member Current member NCBI NM_001159324.2 NP_001152796.1 Accepted alive Link to Nucleotide Sequence:NM_001159324.2Link to Protein Sequence:NP_001152796.1Re-query CCDS DB by Nucleotide ID:NM_001159324Re-query CCDS DB by Protein ID:NP_001152796Link to BLAST:NP_001152796.1
Original member Current member NCBI NM_008064.4 NP_032090.3 Accepted alive Link to Nucleotide Sequence:NM_008064.4Link to Protein Sequence:NP_032090.3Re-query CCDS DB by Nucleotide ID:NM_008064Re-query CCDS DB by Protein ID:NP_032090Link to BLAST:NP_032090.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152796.1 953 P70699 953 100% 0 0
NP_032090.3 953 P70699 953 100% 0 0

Chromosomal Locations for CCDS 25713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119270133 119270678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119272870 119273015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119273975 119274140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119274215 119274311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119274641 119274760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119274856 119274974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119275060 119275191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119276842 119276952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119277501 119277614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119277694 119277778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119278265 119278382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119278876 119279009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119280412 119280563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119281113 119281261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119283174 119283315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119283660 119283812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119284059 119284223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119284447 119284599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119285005 119285064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGAATATACGGAAGCCCCTCTGTTCGAACTCCGTGGTTGGGGCCTGCACCCTTATCTCTCTGACTACAG
CGGTCATCCTGGGTCATCTCATGCTTCGGGAGTTAATGCTGCTTCCCCAAGACCTTCATGAGTCCTCTTC
AGGACTGTGGAAGACGTACCGACCTCACCACCAGGAAGGTTACAAGCCAGGGCCTCTGCACATCCAGGAG
CAGACTGAACAGCCCAAAGAAGCACCCACACAGTGTGATGTGCCCCCCAGCAGCCGCTTTGACTGTGCCC
CCGACAAAGGCATCTCACAGGAGCAATGCGAGGCCCGCGGCTGCTGCTATGTCCCAGCAGGGCAGGTGCT
GAAGGAGCCGCAGATAGGGCAGCCCTGGTGTTTCTTCCCTCCCAGCTACCCAAGCTACCGTCTAGAGAAC
CTGAGCTCTACAGAGTCGGGGTACACAGCCACCCTGACCCGTACCAGCCCGACCTTCTTCCCAAAGGATG
TGCTGACCTTACAGCTGGAGGTGCTGATGGAGACAGACAGCCGCCTCCACTTCAAGATCAAAGATCCTGC
TAGTAAGCGCTACGAAGTGCCCCTGGAGACCCCACGTGTGCTGAGCCAGGCACCATCCCCACTTTACAGC
GTGGAATTCTCAGAGGAACCCTTTGGAGTGATCGTTCGTAGGAAGCTTGGTGGCCGAGTGTTGCTGAACA
CAACCGTGGCCCCCCTGTTCTTCGCTGACCAGTTCCTGCAGCTGTCCACTTCCCTGCCCTCCCAGCACAT
CACAGGCCTGGGGGAACACCTCAGCCCACTCATGCTCAGCACCGACTGGGCTCGTATCACCCTCTGGAAC
CGGGACACACCACCCTCGCAAGGTACCAACCTCTACGGGTCACATCCTTTCTACCTGGCACTGGAGGACG
GTGGCTTGGCTCACGGTGTCTTCTTGCTAAACAGCAATGCCATGGATGTCATCCTGCAACCCAGCCCAGC
CCTAACCTGGAGGTCAACGGGCGGGATCCTGGATGTGTATGTGTTCCTAGGCCCAGAGCCCAAGAGCGTT
GTGCAACAATACCTGGATGTTGTGGGATACCCCTTCATGCCTCCATACTGGGGCCTCGGCTTCCACCTCT
GCCGCTGGGGCTACTCCTCGACCGCCATTGTCCGCCAGGTAGTGGAGAACATGACCAGGACACACTTCCC
GCTGGACGTGCAATGGAATGACCTGGACTACATGGACGCCCGAAGAGACTTCACCTTCAACCAGGACAGC
TTTGCCGACTTCCCAGACATGGTGCGGGAGCTGCACCAGGATGGCCGGCGCTACATGATGATCGTGGACC
CTGCCATCAGCAGCGCAGGCCCTGCTGGGAGTTACAGGCCCTACGACGAGGGTCTGCGGAGGGGCGTGTT
CATCACCAACGAGACTGGGCAGCCGCTGATTGGGAAGGTTTGGCCTGGAACCACCGCCTTCCCTGATTTC
ACCAACCCTGAGACCCTTGACTGGTGGCAGGACATGGTGTCTGAGTTCCACGCCCAGGTGCCCTTCGATG
GCATGTGGCTCGACATGAACGAACCGTCCAACTTCGTTAGAGGCTCTCAGCAGGGCTGCCCCAACAATGA
ACTGGAGAACCCCCCCTATGTGCCCGGGGTGGTTGGCGGGATCTTGCAGGCAGCCACCATCTGTGCCTCC
AGCCACCAATTCCTCTCCACACACTACAACCTCCACAACCTGTACGGCCTCACTGAAGCTATCGCCTCCA
GCAGGGCCCTGGTCAAGACTCGGGGAACACGACCCTTTGTGATCTCCCGCTCAACCTTCTCGGGCCACGG
CCGGTACGCTGGTCACTGGACAGGGGATGTGCGGAGCTCTTGGGAGCATCTTGCATACTCTGTGCCAGAC
ATCCTGCAGTTCAACCTGCTGGGCGTGCCCCTGGTCGGGGCGGACATCTGCGGCTTCATAGGAGACACGT
CAGAAGAGCTGTGTGTGCGCTGGACCCAGTTGGGGGCCTTCTACCCCTTCATGCGGAACCACAATGACCT
GAATAGCGTGCCTCAGGAGCCGTACAGGTTCAGCGAGACGGCGCAGCAGGCCATGAGGAAGGCCTTCGCC
TTACGCTATGCCCTTCTGCCCTACCTGTACACTCTCTTCCACCGCGCCCACGTCAGAGGAGACACGGTGG
CCCGGCCCCTCTTCCTGGAGTTCCCTGAGGATCCCAGCACCTGGTCTGTGGACCGCCAGCTCTTGTGGGG
GCCGGCCCTGCTCATCACACCTGTGCTTGAGCCTGGGAAAACTGAAGTGACGGGCTACTTCCCCAAGGGC
ACGTGGTACAACATGCAGATGGTGTCAGTGGATTCCCTCGGTACTCTCCCTTCTCCATCATCGGCTTCAT
CCTTCAGATCTGCTGTCCAGAGCAAGGGGCAGTGGCTGACACTGGAAGCCCCACTGGATACCATCAACGT
GCACCTGAGGGAGGGGTACATCATACCGCTGCAGGGTCCCAGCCTCACAACCACGGAGTCCCGAAAGCAG
CCCATGGCTCTGGCTGTGGCATTAACAGCAAGCGGCGAGGCCGATGGGGAGCTGTTCTGGGACGACGGGG
AGAGCCTCGCGGTTCTGGAGCGTGGGGCCTACACACTGGTCACCTTCTCAGCCAAGAACAATACCATTGT
GAACAAGTTAGTGCGTGTGACCAAGGAGGGAGCTGAGCTACAACTGAGGGAGGTGACCGTCTTGGGAGTG
GCCACAGCTCCTACCCAGGTCCTTTCCAACGGCATCCCTGTCTCCAATTTCACCTACAGCCCTGACAACA
AGAGCCTGGCCATCCCTGTCTCACTGCTGATGGGAGAGCTGTTTCAAATCAGCTGGTCCTAG

Translation (953 aa):
MNIRKPLCSNSVVGACTLISLTTAVILGHLMLRELMLLPQDLHESSSGLWKTYRPHHQEGYKPGPLHIQE
QTEQPKEAPTQCDVPPSSRFDCAPDKGISQEQCEARGCCYVPAGQVLKEPQIGQPWCFFPPSYPSYRLEN
LSSTESGYTATLTRTSPTFFPKDVLTLQLEVLMETDSRLHFKIKDPASKRYEVPLETPRVLSQAPSPLYS
VEFSEEPFGVIVRRKLGGRVLLNTTVAPLFFADQFLQLSTSLPSQHITGLGEHLSPLMLSTDWARITLWN
RDTPPSQGTNLYGSHPFYLALEDGGLAHGVFLLNSNAMDVILQPSPALTWRSTGGILDVYVFLGPEPKSV
VQQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAIVRQVVENMTRTHFPLDVQWNDLDYMDARRDFTFNQDS
FADFPDMVRELHQDGRRYMMIVDPAISSAGPAGSYRPYDEGLRRGVFITNETGQPLIGKVWPGTTAFPDF
TNPETLDWWQDMVSEFHAQVPFDGMWLDMNEPSNFVRGSQQGCPNNELENPPYVPGVVGGILQAATICAS
SHQFLSTHYNLHNLYGLTEAIASSRALVKTRGTRPFVISRSTFSGHGRYAGHWTGDVRSSWEHLAYSVPD
ILQFNLLGVPLVGADICGFIGDTSEELCVRWTQLGAFYPFMRNHNDLNSVPQEPYRFSETAQQAMRKAFA
LRYALLPYLYTLFHRAHVRGDTVARPLFLEFPEDPSTWSVDRQLLWGPALLITPVLEPGKTEVTGYFPKG
TWYNMQMVSVDSLGTLPSPSSASSFRSAVQSKGQWLTLEAPLDTINVHLREGYIIPLQGPSLTTTESRKQ
PMALAVALTASGEADGELFWDDGESLAVLERGAYTLVTFSAKNNTIVNKLVRVTKEGAELQLREVTVLGV
ATAPTQVLSNGIPVSNFTYSPDNKSLAIPVSLLMGELFQISWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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