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Report for CCDS25561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25561.1 Public Mus musculus 11 Polg2 23 108 98 CCDS HistoryNCBI Gene:50776Re-query CCDS DB by CCDS ID:25561.1Re-query CCDS DB by GeneID:50776See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021060.5 ENSMUSP00000021060.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021060.5Link to Ensembl Protein Viewer:ENSMUSP00000021060.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021060Re-query CCDS DB by Protein ID:ENSMUSP00000021060
Original member Current member NCBI NM_015810.2 NP_056625.2 Accepted alive Link to Nucleotide Sequence:NM_015810.2Link to Protein Sequence:NP_056625.2Re-query CCDS DB by Nucleotide ID:NM_015810Re-query CCDS DB by Protein ID:NP_056625Link to BLAST:NP_056625.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056625.2 459 Q9QZM2 459 100% 0 0

Chromosomal Locations for CCDS 25561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106768306 106768471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106772652 106772752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106773385 106773465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106773595 106773735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106775427 106775600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106777143 106777248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106777435 106777561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106778959 106779442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGCGCTGCGGTGGCGGCGCCAGGGCCTGCCGCAGGGCCTGCAGGTGCTGGCTGTCCGGGTACGCGGGTC
CCGCAGATGGGACGCAGCAGCCTGACGCCCCCGAGCATGCGGTGGCCCGCGAGGCGCTGGTAGACCTCTG
CCGGAGGAGGCACTTTTTCAGCGGGACGCCGCAGCAGCTCAGCACGGCTGCTCTGCTGAGCGGGTGCCAC
GCGCGCTTTGGACCTTTGGGTGTAGAGTTACGAAAGAACCTAGCCTCACAGTGGTGGTCCTCTATGGTGG
TGTTCAGGGAGCAGGTCTTCGCGGTGGACTCCCTCCACCAGGAGCCGGGCTCTTCGCAGCCGAGGGACAG
TGCCTTCAGGTTAGTCTCTCCAGAAAGTATACGCGAAATCTTGCAAGACAGAGAGCCGAGTAAGGAACAG
CTAGTGGCATTTCTTGAGAACTTATTAAAAACTTCTGGGAAACTACGGGCGACTCTTCTTCACGGTGCCT
TGGAGCACTATGTTAATTGCCTGGATCTGGTAAACAGAAAGCTACCTTTCGGTCTTGCTCAGATTGGAGT
CTGTTTCCATCCTGTTTCGAACAGCAATCAGACACCCAGCAGTGTTACAAGAGTTGGTGAAAAGACGGAA
GCTTCCTTGGTATGGTTTACTCCCACAAGGACTTCGAGCCAGTGGCTTGATTTCTGGTTGCGTCATCGGC
TTCTGTGGTGGAGAAAGTTTGCTATGAGTCCCTCTAACTTCAGCAGCGCTGATTGTCAGGATGAATTGGG
ACGCAAGGGAAGCAAACTTTACTACAGCTTCCCCTGGGGAAAGGAGCCAATAGAAACCCTGTGGAACCTA
GGAGATCAAGAACTCCTACACACATATCCTGGAAATGTGTCTACGATACAGGGTCGAGATGGGCGGAAAA
ACGTGGTTCCTTGCGTTCTGTCTGTAAGTGGGGACGTAGACCTGGGCACGCTGGCTTACCTCTACGATTC
CTTCCAGCTGGCAGAGAACTCCTTTGCCAGGAAGAAGAGCCTCCAGAGAAAGGTGCTTAAACTTCACCCT
TGTTTAGCCCCTATTAAGGTCGCTTTGGATGTGGGGAAAGGCCCAACGGTAGAACTCCGACAGGTTTGTC
AAGGGCTACTTAATGAGTTACTAGAAAATGGGATTTCTGTGTGGCCTGGCTATTCGGAAACTGTCCATTC
CTCATTAGAGCAACTCCATTCAAAGTACGATGAGATGAGTGTCCTCTTCTCAGTTCTGGTCACTGAGACT
ACGCTGGAAAATGGGCTAATCCAGCTGCGGAGCAGAGACACCACGATGAAGGAAATGATGCACATATCCA
AGCTGAGAGACTTCCTGGTCAAGTACCTAGCGTCAGCTAGCAATGTGTAG

Translation (459 aa):
MRCGGGARACRRACRCWLSGYAGPADGTQQPDAPEHAVAREALVDLCRRRHFFSGTPQQLSTAALLSGCH
ARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQ
LVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTE
ASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLYYSFPWGKEPIETLWNL
GDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHP
CLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTET
TLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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