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Report for CCDS25469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25469.1 Public Mus musculus 11 Rundc1 23 108 98 CCDS HistoryNCBI Gene:217201Re-query CCDS DB by CCDS ID:25469.1Re-query CCDS DB by GeneID:217201See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040561.5 ENSMUSP00000042151.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040561.5Link to Ensembl Protein Viewer:ENSMUSP00000042151.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040561Re-query CCDS DB by Protein ID:ENSMUSP00000042151
Original member Current member NCBI NM_172566.4 NP_766154.2 Accepted alive Link to Nucleotide Sequence:NM_172566.4Link to Protein Sequence:NP_766154.2Re-query CCDS DB by Nucleotide ID:NM_172566Re-query CCDS DB by Protein ID:NP_766154Link to BLAST:NP_766154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766154.2 615 Q0VDN7 615 100% 0 0

Chromosomal Locations for CCDS 25469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101425104 101425610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101429452 101429610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101431348 101431546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101432082 101432198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101433452 101434317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCGACGGTGGAAGTGGCTACGGAGCTAGGAACTGTGGTGACCGCTGTCGGGCCTAAGGCGAAGGACG
AGGAAGAAGAAGAAGAGGAGGAGGAGTCGCTGCCACCATGCGAGACTGTGCGCTGGGCTCCCGTGGGGGC
AGTGGCCGAGGCCGGTCCTGGGGCGGCGACGTTCTCGGAGGCGGCGGCAGCCGAAGAGCCTGGAGCGGCT
CCGGGCTCTCCATCCGACGCGACTGTCCGCACGCTGAGGCGGCTGGAAGCCGAGCGGCGGCAGCTGGATT
CGGCCCTGCTCGCGCTGTCCTCGCACTTCGCGCAGGTGCAGTTCCGTCTGCGCCAGGTAGTGCGCGGGGC
GCCGGCGGAGCAGCAGCGTCTCCTGCGCGAGCTCGAAGACTTTGCCTTCCGCGGCTGTCCTCACGTCCTG
GGTTACGAGGGGCTGGCAGACCCTTGTGGCGGTGACGAAAGCGATGTGCTGCCGGGGGACCGGCCACGGG
TGCGGGGTGAGGACCAGAGCGAACAGGAAAAACGGGAGCGCCTGGAAACCCAGAGGGAGAAGCAGAAAGA
ACTGATTCTGCAGCTGAAGACCCAGCTTGATGACCTGGAGACGTTTGCCTATCAGGAGGGTAGTTATGAC
TCCCTGCCGCAGTCCGTGGTCTTGGAAAGACAGCGGGTGATCATCGATGAGTTAATAAAGAAACTGGACA
TGAATCTGAATGAGGACATCAGTTCCCTTTCCACTGAGGAGCTTCGTCAACGTGTGGACGCAGCAGTGGC
TCAGATTGTCAACCCAGTGCGGGTGAAAGAGCAGCTGGTGGAGCAGCTGAAAACCCAGATCCGGGACCTT
GAGATGTTCATCAGCTTCATCCAAGATGAAGTGGGAAGCCCCCTGCAGACAGGTGGACACTGTGAGTGCC
AAGCCAGCGGGAAGGTGGGAATCGGCTCCACCAGGGTGGGTGGCAGTACACTGCCCCCAGGACCCGGCAA
AGCAAAGGCAGAAGATGCCAAGAGAGCCCGGGAGACGGGGCTGCACCTGATGCGGCGAGCGCTGGCTGTG
CTCCAGATCTTCACTGTTAGCCAGCTGGGCTGTGCCACGGGCCAGATCCCTCAAACCTTGTGGCAGAGGA
GCCAGGCAGACAGAGACTACTCCCACTTACTGAAAAGACTGGAAGTATCGGTCGACAGAGTAAAGCAGCT
AGCCTTGAGACATCAGCCACATGACCACGTCATCACTTCGGCCAACCTCCAGGACCTCTCTCTGGGAGGC
AAGGATGAGCTGACCACGGTTGTGCGGAAGGAGCTGACAGTGGCTGTGAGGGACCTGCTGGCCCATGGAC
TGTATGCCTCCTCCTCTGGGATGAGCCTTGTCATGGCCCCCCTTGCTTGCTTGTTGCCAGTTTTCTCCTC
AGCCCCCGAGACCATGCACCCATGGGAGCTCTTTGTAAAGTACTACCATGCCAAGAATGGCCGTGCATAT
GTGGAATCCCCGGCCCGGAAGCTCTCACAGTCCTTTGCTCTGCCTATAATGGGTGACACTGCTGTGACCC
CCAAACAGAGCCTTCTGACAGCCATCCACCTGGTGCTGACAGAGCATGACCCTTTCAAGCGCAGCGCTGA
CTCAGAACTGAAGGCGTTGGTGTGCATGGCACTGAATGAGCAGCGCCTGGTGTCCTGGGTGAACCTCATC
TGCAAGTCAGGGTCCCTCATCGAGCCCCATTACCAGCCCTGGAGCTACATGGCCCACACAGGTTTTGAGA
GTGCCCTCAACCTGCTCAGCCGCCTTAGCAGCCTCAAGTTCAGCCTTCCTGTAGACTTGGCCGTGCGCCA
GCTCAAGAACATCAAAGATGCCTTTTGA

Translation (615 aa):
MATVEVATELGTVVTAVGPKAKDEEEEEEEEESLPPCETVRWAPVGAVAEAGPGAATFSEAAAAEEPGAA
PGSPSDATVRTLRRLEAERRQLDSALLALSSHFAQVQFRLRQVVRGAPAEQQRLLRELEDFAFRGCPHVL
GYEGLADPCGGDESDVLPGDRPRVRGEDQSEQEKRERLETQREKQKELILQLKTQLDDLETFAYQEGSYD
SLPQSVVLERQRVIIDELIKKLDMNLNEDISSLSTEELRQRVDAAVAQIVNPVRVKEQLVEQLKTQIRDL
EMFISFIQDEVGSPLQTGGHCECQASGKVGIGSTRVGGSTLPPGPGKAKAEDAKRARETGLHLMRRALAV
LQIFTVSQLGCATGQIPQTLWQRSQADRDYSHLLKRLEVSVDRVKQLALRHQPHDHVITSANLQDLSLGG
KDELTTVVRKELTVAVRDLLAHGLYASSSGMSLVMAPLACLLPVFSSAPETMHPWELFVKYYHAKNGRAY
VESPARKLSQSFALPIMGDTAVTPKQSLLTAIHLVLTEHDPFKRSADSELKALVCMALNEQRLVSWVNLI
CKSGSLIEPHYQPWSYMAHTGFESALNLLSRLSSLKFSLPVDLAVRQLKNIKDAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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