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Report for CCDS25453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25453.1 Public Mus musculus 11 Plekhh3 23 108 98 CCDS HistoryNCBI Gene:217198Re-query CCDS DB by CCDS ID:25453.1Re-query CCDS DB by GeneID:217198See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043397.13 ENSMUSP00000046044.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043397.13Link to Ensembl Protein Viewer:ENSMUSP00000046044.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043397Re-query CCDS DB by Protein ID:ENSMUSP00000046044
Original member Current member NCBI NM_146030.2 NP_666142.1 Accepted alive Link to Nucleotide Sequence:NM_146030.2Link to Protein Sequence:NP_666142.1Re-query CCDS DB by Nucleotide ID:NM_146030Re-query CCDS DB by Protein ID:NP_666142Link to BLAST:NP_666142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666142.1 796 Q8VCE9-1 796 100% 0 0

Chromosomal Locations for CCDS 25453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101162879 101163064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101163506 101163697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101164013 101164471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101164659 101164791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101165051 101165187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101165484 101165691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101166354 101166660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101167450 101167570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101167675 101167832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101167918 101168109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101168215 101168294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101168642 101168697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101170725 101170886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGCCTCTCCCCGGGGGATTGTGGTGGCTTCTCTGCTGCCGTCGAGGCTTCACTCTTCTGCACCGGGACT
ACGGGGACGGCGAGCTTAGCGGGGACGGGGACGAAGACGAGGACGACGAGACCTTTGAGCTAAGGACCCC
GAGTCCAGCGGGCGGCGGGAGGGGTTCCCTGGACGTTACTCTGACTCAGCCAACAAGGAATGGGCCCATC
TCAGACAGACTGCAGGGCTGGGAAGAGACCTGGAGCCTCATCCCAGACAAGGGACTTCCGGAAGAGGACC
CTGACATCATTGTGAAAGGTTGGCTGTACCGGGAACCTCGTGGAGGAGGGGCAAGGCCATGGTTACTCCC
ACGCAGAGCCTGGTTTGTGCTCACCAGAGATTCCCTGGACCAGTTCAGCAGCAGCGGGAAGGGGGCAAGG
CGACTCGGAAGCCTGGTCCTCACAAGCTTGTGCTCAGTGACTGGGCCGGAGCGTAGGCCCAAGGAGACTG
GTCTGTGGTCAGTCACTGTGTCTGGCCGGAAACACAGCATCCGCCTCTGCTCTCCGCGCCAGGCAGAGGC
AGAGCGCTGGGGGGTAGCACTGCGGGAGGTGATTGCCTCCAAAGCTCCGCTGGAGACCCCTACCCAACTG
CTGCTCAGGGACATCCAGGAGAGCTGTGGAGACCCAGAAGCAGTGGCCCTCATCTACCGGCGGAACCCAA
TCCTGAGGCACACCAGTAGTGCCTTGTATGCCCCGCTCTTGCCCCTGCCCTATGAAGTCAGCGCTCCAGG
TCCAGGCTACGCACCCTTACGAGAGGAGGCAGTGAGGCTGTTCCTGGCACTGCAGGCGCTGGAGGGGGCA
CGGCGCCCAGGGCCCCTGATGCAGGGTGTGCTCCAGACCTGCCGGGACCTGCCTGCACTCCAGGACGAAC
TTTTCCTGCAGCTGGCTAAGCAGACCTCAGGTCCTGCAGGTCCCCCTGGGCTCCCTGCCACTCAAGATCC
TGCAACCCTGCGATACTGGCAGCTTCTCACTTGCATGAGCTGCACCTTCCGGCCGGGGGGAGCTGTCCGA
GGGCACCTCCTAGGGCATTTGGAAAGGACGGAGCAGGCACTCCCAGACTCAGAACTGGCAGAATATGCAC
GCTTCATCCGGAAGGCTCTGGGCCGTACACGGGGCCGAGAGCTGGTGCCTTCACTAGCAGAGATTTCCGC
ACTGAGCAGAAGGCAGGAGCTGTTGTGTACTGTGCACTGTCCCGGAGCTGGAGCCTGTCCTGTGTCTATC
GACTCCCACACTACAGCGGGAGAGGTGGCTCGAGAGTTGGTGGGCAGGCTAGGTTTGGCCCGGAGCCGGA
ACGCATTCGCTTTGTATGAGCAGCGAGGAGCCCAGGAGCGAGCCCTGGCTGGGGGGACCCTCGTGGCCGA
CGTGCTCACCAGGTTTGAGAATTTGACTTCGGAGGAAGCCGGACTGGAGGACTCGCCGGACTGCGGGTGG
AGACTGTGTCTTCGTCTTCACGGACCTCTGCACCCAGAAGGGCTATCTCCAGAGGGTCACGAATTGCCTT
TCCTCTTTGAGCAGGCTCACGCTCTGCTGCTGCGCGGCCGGCCGCCCCCACCCGAGGACACGCTGCGCGC
CCTGGCGGCGCTGCGCCTGCAGAGTTTGCACCGGGACTTTTCCCCGCGGGGACCCCTGCCGCTCCTGGAC
CGCCTGCTGCCACCCCCCATCCCGCCGCGCGAACAACCGCCGTGCCCTACCCGAAGGCCACCGCCCTCCG
CTGCCCTGCTGGCCGGGGCGCTCTGGAGCCCCGGCCTGGCCAAGAGGCGGGCCGAGCGTGCCCGGCGCGG
CGGAACCGGCCGCTCTACGGGAAGCACGGCCCAGGTGGGAGGTGGCGGCGCCAGCACGACGGCTGCGGTG
CTGGGCGGCTGGAAGCGGCTGCGGGGCATGGGCCAAGCTGAAGCCATGGCTGCCTACCTGGCTCTAGCGG
CGCAGTGTCCGGGGTTCGGCGCTGCTCGGTATGACGTTCTGGAGCTGAGCACGGAGCCTGGTGGAGGTGC
TCCACAGAAGCTCTGCCTGGGTCTGGGAGCAAAGGCCATGTCGCTCTCCAGGCCTGGTGAGACAGAACCC
ATCCACAGTGTCAGCTATGGTCATGTGGCCGCCTGCCAGCTAATAGGCCCTCACACCTTAGCACTGAGGG
TGGGCGACAGCCAGCTCCTCCTGCAGAGTCCCCAGGTGGAAGAGATCATGGAGCTGGTGAATGCCTACTT
GGCCAACCCCTCCCCCGAGAGGCCCTGCCGCAGTGGCAGCAGCTCTGGTCCTCCAAGCCAAGACCTGCCG
GACACCTCCCCTCCCAGCCAGCACCAAGTTCTGGAAGAGCCCCAGGGACAGTCTGGCTGCTTGAAGCAGC
TGCAGGACTAA

Translation (796 aa):
MPLPGGLWWLLCCRRGFTLLHRDYGDGELSGDGDEDEDDETFELRTPSPAGGGRGSLDVTLTQPTRNGPI
SDRLQGWEETWSLIPDKGLPEEDPDIIVKGWLYREPRGGGARPWLLPRRAWFVLTRDSLDQFSSSGKGAR
RLGSLVLTSLCSVTGPERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERWGVALREVIASKAPLETPTQL
LLRDIQESCGDPEAVALIYRRNPILRHTSSALYAPLLPLPYEVSAPGPGYAPLREEAVRLFLALQALEGA
RRPGPLMQGVLQTCRDLPALQDELFLQLAKQTSGPAGPPGLPATQDPATLRYWQLLTCMSCTFRPGGAVR
GHLLGHLERTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRRQELLCTVHCPGAGACPVSI
DSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLTSEEAGLEDSPDCGW
RLCLRLHGPLHPEGLSPEGHELPFLFEQAHALLLRGRPPPPEDTLRALAALRLQSLHRDFSPRGPLPLLD
RLLPPPIPPREQPPCPTRRPPPSAALLAGALWSPGLAKRRAERARRGGTGRSTGSTAQVGGGGASTTAAV
LGGWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAPQKLCLGLGAKAMSLSRPGETEP
IHSVSYGHVAACQLIGPHTLALRVGDSQLLLQSPQVEEIMELVNAYLANPSPERPCRSGSSSGPPSQDLP
DTSPPSQHQVLEEPQGQSGCLKQLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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