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Report for CCDS25419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25419.1 Public Mus musculus 11 Hap1 23 108 98 CCDS HistoryNCBI Gene:15114Re-query CCDS DB by CCDS ID:25419.1Re-query CCDS DB by GeneID:15114See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103124.10 ENSMUSP00000099413.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103124.10Link to Ensembl Protein Viewer:ENSMUSP00000099413.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103124Re-query CCDS DB by Protein ID:ENSMUSP00000099413
Original member Current member NCBI NM_010404.3 NP_034534.1 Accepted alive Link to Nucleotide Sequence:NM_010404.3Link to Protein Sequence:NP_034534.1Re-query CCDS DB by Nucleotide ID:NM_010404Re-query CCDS DB by Protein ID:NP_034534Link to BLAST:NP_034534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034534.1 598 O35668-2 598 100% 0 0

Chromosomal Locations for CCDS 25419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100349172 100349619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100351210 100351301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100351418 100351552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100351843 100351905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100352185 100352315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100353544 100353610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100353688 100353787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100353957 100354135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100354246 100354362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100354672 100354748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100355690 100356077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGCGCCCGAAAGAGCAGGTGCAGAGCGGTGCGGGAGACGGGACAGGGTCGGGGGACCCAGCAGCAGGCA
CCCCCACGACCCAGCCTGCAGTTGGTCCCGCTCCGGAGCCCTCGGCGGAGCCCAAACCTGCTCCAGCGCA
GGGAACCGGGTCCGGACAAAAATCAGGATCCCGAACCAAGACAGGAAGCTTTTGTCGGTCCATGATCATT
GGTGATTCGGACGCACCATGGACCCGCTACGTATTCCAGGGGCCTTACGGTCCCCGGGCCACTGGCCTGG
GCACTGGAAAGGCCGAGGGAATCTGGAAGACACCAGCCGCGTACATCGGCCGGAGGCCCGGCGTGTCCGG
CCCTGAGCGTGCGGCGTTTATTCGAGAGCTGCAGGAAGCGTTGTGTCCTAATCCACCACCCACGAAGAAG
ATCACCGAAGATGATGTCAAAGTGATGTTGTATTTGCTGGAAGAGAAAGAACGGGACCTGAACACAGCCG
CCCGGATCGGCCAGTCCCTGGTGAAACAGAACAGTGTCTTGATGGAGGAGAATAATAAGCTGGAAACCAT
GCTGGGCTCAGCCAGGGAGGAGATTTTACATCTCCGGAAGCAGGTGAACCTGCGAGATGACCTTCTTCAG
CTCTACTCAGACTCTGATGACGATGATGATGAGGAAGACGAGGAAGACGAGGAAGAGGGCGAAGAGGAGG
AACGAGAAGGACAGAGGGATCAAGACCAGCAGCACGACCACCCCTATGGTGCCCCCAAGCCACACCCTAA
GGCTGAGACAGCGCACCGCTGCCCACAGCTGGAAACCCTGCAGCAGAAGCTCAGGCTTCTGGAGGAAGAG
AACGACCACCTGCGAGAGGAGGCCTCCCACCTTGACAACCTGGAGGACGAAGAGCAGATGCTCATTCTGG
AATGTGTGGAGCAGTTCTCTGAAGCCAGCCAGCAGATGGCAGAGCTATCGGAAGTGCTGGTGTTGAGGCT
GGAAGGCTATGAGAGGCAGCAGAAAGAGATCACTCAGCTGCAGGCCGAGATCACCAAGCTACAACAGCGT
TGTCAGTCTTATGGGGCCCAGACAGAGAAACTGCAGCAGATGCTGGCCTCAGAGAAGGGGATCCACTCGG
AGAGCCTGCGAGCTGGCTCCTACATGCAGGATTATGGGAGCAGGCCTCGTGACCGCCAGGAGGATGGGAA
GAGTCATCGCCAGCGCTCCTCCATGCCCGCAGGCTCTGTCACCCACTATGGATACAGTGTGCCTCTGGAT
GCACTTCCAAGTTTCCCAGAGACACTGGCTGAGGAGCTCCGAACATCTCTGAGGAAGTTCATCACTGACC
CTGCGTATTTCATGGAGAGACGTGACACTCACTGCAGGGAGGGGCGGAAGAAGGAGCAGAGGGCGATGCC
ACCCCCACCGGCTCAAGATCTCAAGCCACCTGAAGATTTTGAGGCTCCAGAGGAGTTGGTTCCTGAGGAG
GAGCTGGGGGCCATCGAAGAGGTGGGGACAGCTGAGGATGGGCAGGCAGAAGAGAACGAGCAGGCGTCTG
AGGAGACCGAGGCCTGGGAGGAGGTGGAACCGGAGGTGGACGAGACCACAAGGATGAATGTGGTGGTCTC
CGCCCTGGAGGCCAGTGGCCTGGGCCCTTCCCACCTGGACATGAAGTATGTCCTCCAGCAACTGTCCAAC
TGGCAGGACGCCCACTCTAAGCGGCAGCAGAAGCAGAAGGTGGTCCCAAAAGGTGAGTGTTCCCGCAGAG
GACACCCTCCTGCCAGTGGGACAAGCTTTCGATCATCAACCATATGA

Translation (598 aa):
MRPKEQVQSGAGDGTGSGDPAAGTPTTQPAVGPAPEPSAEPKPAPAQGTGSGQKSGSRTKTGSFCRSMII
GDSDAPWTRYVFQGPYGPRATGLGTGKAEGIWKTPAAYIGRRPGVSGPERAAFIRELQEALCPNPPPTKK
ITEDDVKVMLYLLEEKERDLNTAARIGQSLVKQNSVLMEENNKLETMLGSAREEILHLRKQVNLRDDLLQ
LYSDSDDDDDEEDEEDEEEGEEEEREGQRDQDQQHDHPYGAPKPHPKAETAHRCPQLETLQQKLRLLEEE
NDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLEGYERQQKEITQLQAEITKLQQR
CQSYGAQTEKLQQMLASEKGIHSESLRAGSYMQDYGSRPRDRQEDGKSHRQRSSMPAGSVTHYGYSVPLD
ALPSFPETLAEELRTSLRKFITDPAYFMERRDTHCREGRKKEQRAMPPPPAQDLKPPEDFEAPEELVPEE
ELGAIEEVGTAEDGQAEENEQASEETEAWEEVEPEVDETTRMNVVVSALEASGLGPSHLDMKYVLQQLSN
WQDAHSKRQQKQKVVPKGECSRRGHPPASGTSFRSSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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