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Report for CCDS25372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25372.1 Public Mus musculus 11 Tns4 23 108 98 CCDS HistoryNCBI Gene:217169Re-query CCDS DB by CCDS ID:25372.1Re-query CCDS DB by GeneID:217169See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017751.2 ENSMUSP00000017751.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017751.2Link to Ensembl Protein Viewer:ENSMUSP00000017751.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017751Re-query CCDS DB by Protein ID:ENSMUSP00000017751
Original member Current member NCBI NM_172564.3 NP_766152.2 Accepted alive Link to Nucleotide Sequence:NM_172564.3Link to Protein Sequence:NP_766152.2Re-query CCDS DB by Nucleotide ID:NM_172564Re-query CCDS DB by Protein ID:NP_766152Link to BLAST:NP_766152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766152.2 696 Q8BZ33 696 100% 0 0

Chromosomal Locations for CCDS 25372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99068181 99068322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99070402 99070428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99070653 99070721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99071317 99071485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99072209 99072280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99073672 99073749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99073896 99073988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99075115 99075240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99075533 99075619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99078406 99078830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99080080 99080455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99085667 99086093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGTCCAGCTCTCTGCTGGCTGGAGGTCACATGGTCAGCTTGACTCCCTGTGAGGAATCCAGGATGGCCC
TGCACCCAACCCCCAGCCCTGGCCTCCCAGCCCTGTGTCCTTACTACACCACAGAGAGCTGGGGAACCCA
GCCTCTGATGGCCCCCACACTCCGCAAAGGCAGCTCCGACAGGCTCCAGCAGGCCCAGCAGGCTGAAGCC
AGAGCTCACTGCCTCCTTCAGGGCCCTGGGGAGCAGGCCTCAGGGGCCTCGCAGGATCTGGAATCTTGCA
TTGACTTCTCCCTGGAGGCCCTCAACCAGATGATCCTAGAGATCGACCCTACTTTCCAGTTGCTTCCCTC
TGGGACTGCTGGTCCCCAGGCTGAGTCTACCAACAGTATCATGTCAAGGAACAAGAAGGAGGAACCCGAA
GCCTTAGATATAAAGTACATCGAAGTGACCTCCACCAGATCAAGATACCTTGACGGTCCCCAACGCTGCT
CCAGCCCGTGTGCCACCCCACCATTTGGCTCCCCGCGCAGTGGCAGCCTCTTCCTCTCCAGGGACATCCC
CCGAGAGACCCGCAGCAGCAGCAACGAGAGCCTCATCTTCTCTGGGAACCAGGGCAGGGGTCCCTCTCCT
CTCACCCCTTCTTCCCTTAGCAATGCCATCCCTTGCCGAGAAAGCAGGACCTCCGGCTCTCCACTGGCAA
CTCCTCCAGGCTGGGAGAAAGGGCTCAGGGCCCCACAGCGGGGCAGCAGGGTCTCTATACTGTCAGCCAG
CCCTGTATCGGATGTCAGCTATGTGTTTGGAAGCAATCAGTCCCTCCCCCACTCAAGCCTCTCCAGCTAT
CCGTCATCTTCTAGATCCTTGGGAAGTCCAGCCAGCTCATCTTCCAGCCTCCACAGCCTGGACCGAGGGT
CTCAGTGTGGGAGACCTAGTGATGCCCAGGCTCCTAGTAACCCCATACTGGGCATGGGCCAGCCCCAAGC
AGTGCAGTCTACTCCAGTGGCTAAGGAGCAGGCTAGTAGCTGCCCCGCATCTGTCACCAACTCCATGGCG
GACATACCCATAGTGCTCATCAATGGGAGCCCAGAACCACAGTCTCCCCCAGCCCAGCGGACACCAGGAC
ACCAGGACTCTGTCCAGTCTAGGGTTACATCTCCCAGCCACCTCTGTCAAGCCATTAAGAGCCCCAGCAA
GACTCTGCCAGATGTTCCTCTCCCTGCATCTCCAGATGGTCCTGCCAAGGACATGCAGCCCACCATGAAG
TTCGTGATGGACACATCAAAGTATTGGTTTAAGCCAAGCATCACTCGAGAGCAAGCAATCAATCTCCTGA
GGACGGAGAAGCCGGGTGCCTTTGTCATCAGGGACAGTTCCTCCTACAGAGGCTCCTTCGGCCTTGCCCT
GAAGGTACAGGAGACTTCCGCATCTGCTCCAAACCGACCAGGCGAGGACAGCAGTGACCTTATCCGTCAC
TTCCTGATTGAGTCTTCGGCCAAAGGAGTACATCTGAAAGGAGCAGATGAGGAGCCCTACTTTGGGAGCC
TCTCTTCCTTCGTGTGCCAGCACTCCATTATGGCCCTGGCCCTGCCCTGCAAACTCACCATCCCACAGAA
AGAACTGGGAGGTGCAGAGCCAGCATCGGACTCCCCCACACACGGCCAGACCTCCTGCCTGAAGATATCA
GCCGGTTGCCACACACTGTACCTGAGTTCTGTGAGTGTGGAGACCCTGAGCGGAGCCCTGGCTGTGCAGA
AGGCTATCTCAGTCACCTTGGAGAGGGATGTCCTCCCCACACCCACTGTCGTCCACTTCAAAGTCACTGA
ACAGGGCATTACTCTGACAGACGTCCAAAGGAAGGTGTTCTTCCGACGGCACTACCCACTCAGCGCCCTC
CGCTTCTGTGGAATGGACCCCGAGCAACGGAAGTGGCAGAAGTACTGCAAGCCTTCCAGGATCTTTGGGT
TTGTGGCCAAGAGCCAGACAGAACCACAAGAGAACGTGTGCCACCTCTTCGCAGAGTACGATGCGGTCCA
GCCAGCTTCCCAGGTCATCAGCCTAGTGACTGCTCTGCTTCAGGACACAGAAAGGATGTAG

Translation (696 aa):
MSSSLLAGGHMVSLTPCEESRMALHPTPSPGLPALCPYYTTESWGTQPLMAPTLRKGSSDRLQQAQQAEA
RAHCLLQGPGEQASGASQDLESCIDFSLEALNQMILEIDPTFQLLPSGTAGPQAESTNSIMSRNKKEEPE
ALDIKYIEVTSTRSRYLDGPQRCSSPCATPPFGSPRSGSLFLSRDIPRETRSSSNESLIFSGNQGRGPSP
LTPSSLSNAIPCRESRTSGSPLATPPGWEKGLRAPQRGSRVSILSASPVSDVSYVFGSNQSLPHSSLSSY
PSSSRSLGSPASSSSSLHSLDRGSQCGRPSDAQAPSNPILGMGQPQAVQSTPVAKEQASSCPASVTNSMA
DIPIVLINGSPEPQSPPAQRTPGHQDSVQSRVTSPSHLCQAIKSPSKTLPDVPLPASPDGPAKDMQPTMK
FVMDTSKYWFKPSITREQAINLLRTEKPGAFVIRDSSSYRGSFGLALKVQETSASAPNRPGEDSSDLIRH
FLIESSAKGVHLKGADEEPYFGSLSSFVCQHSIMALALPCKLTIPQKELGGAEPASDSPTHGQTSCLKIS
AGCHTLYLSSVSVETLSGALAVQKAISVTLERDVLPTPTVVHFKVTEQGITLTDVQRKVFFRRHYPLSAL
RFCGMDPEQRKWQKYCKPSRIFGFVAKSQTEPQENVCHLFAEYDAVQPASQVISLVTALLQDTERM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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