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Report for CCDS25335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25335.1 Public Mus musculus 11 Cacnb1 23 108 98 CCDS HistoryNCBI Gene:12295Re-query CCDS DB by CCDS ID:25335.1Re-query CCDS DB by GeneID:12295See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017552.12 ENSMUSP00000017552.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017552.12Link to Ensembl Protein Viewer:ENSMUSP00000017552.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000017552Re-query CCDS DB by Protein ID:ENSMUSP00000017552
Original member NCBI NM_145121.3 NP_660099.2 Updated not alive Link to Nucleotide Sequence:NM_145121.3Link to Protein Sequence:NP_660099.2Re-query CCDS DB by Nucleotide ID:NM_145121Re-query CCDS DB by Protein ID:NP_660099
Current member NCBI NM_145121.4 NP_660099.2 Accepted alive Link to Nucleotide Sequence:NM_145121.4Link to Protein Sequence:NP_660099.2Re-query CCDS DB by Nucleotide ID:NM_145121Re-query CCDS DB by Protein ID:NP_660099Link to BLAST:NP_660099.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660099.2 597 Q8R3Z5-1 597 99.665% 0 2

Chromosomal Locations for CCDS 25335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98002901 98003362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98005129 98005314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98005688 98005783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009281 98009432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009569 98009678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009858 98009916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98010296 98010376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98010627 98010646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98011866 98011942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98012185 98012321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98012812 98012934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98016723 98016842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98019680 98019766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98022342 98022425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGTCCAGAAGAGCGGCATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAGGTCTTCG
ACCCCAGCCCACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTC
GGATACAACATCCAACAGCTTCGTCCGCCAGGGCTCAGCAGAGTCCTACACGAGCCGACCATCAGACTCT
GATGTGTCTCTGGAGGAGGACCGGGAAGCCTTAAGGAAGGAGGCAGAGCGCCAGGCCTTAGCCCAGCTCG
AGAAAGCCAAGACCAAACCAGTGGCTTTTGCTGTTCGGACAAATGTTGGCTACAATCCGTCTCCAGGGGA
TGAGGTGCCTGTACAGGGAGTGGCCATCACCTTTGAGCCCAAGGACTTCCTACACATCAAGGAGAAGTAC
AATAATGACTGGTGGATTGGGCGGCTGGTGAAGGAAGGCTGCGAGGTTGGCTTCATCCCCAGCCCGGTCA
AACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTCCAGCAAGTCAGG
TGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTGCC
AAACAGAAGCAGAAATCGACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCC
TGGTGGGACCGTCGCTCAAGGGCTATGAGGTGACAGACATGATGCAGAAAGCGTTGTTTGACTTCCTCAA
GCATCGGTTTGATGGCAGGATTTCCATCACCCGGGTAACAGCTGACATTTCCCTGGCCAAACGCTCCGTC
CTCAACAACCCCAGCAAACACATCATCATTGAGCGCTCCAACACGCGTTCCAGCCTGGCTGAGGTACAGA
GTGAAATTGAGAGGATCTTCGAGCTGGCCCGGACCTTGCAGCTGGTCGCCTTGGACGCTGACACCATCAA
CCACCCAGCCCAGCTCTCTAAAACGTCGCTGGCCCCCATCATTGTTTACATCAAGATCACATCTCCCAAG
GTACTGCAGAGGCTCATCAAATCCCGAGGGAAGTCTCAATCCAAACACCTCAATGTCCAAATAGCAGCCT
CGGAGAAGCTGGCACAGTGTCCCCCCGAAATGTTTGACATAATCCTGGACGAGAACCAATTGGAAGATGC
CTGCGAGCACCTGGCTGAGTACTTGGAAGCCTACTGGAAGGCCACACATCCGCCTAGCAGCACGCCACCC
AATCCGCTGCTGAACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCC
AGGGACCCTACCTTGCTTCCGGGGACCAGCCGCTGGACCGGGCCACTGGGGAACATGCCAGTGTGCACGA
GTACCCCGGGGAACTGGGCCAGCCCCCAGGCCTTTACCCCAGCAACCACCCACCTGGCCGGGCAGGCACC
CTGCGGGCGCTATCCCGCCAAGACACCTTTGATGCTGACACCCCCGGCAGCCGAAATTCTGCCTACACGG
AGCCGGGAGACTCGTGTGTGGACATGGAGACAGACCCCTCAGAGGGCCCAGGGCCTGGAGACCCTGCAGG
GGGAGGCACACCACCAGCCCGGCAGGGCTCCTGGGAAGACGAGGAAGACTATGAGGAGGAGATGACCGAC
AACAGGAACCGGGGCCGGAATAAGGCCCGCTACTGTGCGGAGGGTGGTGGGCCGGTTCTGGGGCGCAATA
AGAATGAGCTGGAGGGCTGGGGACAAGGCGTCTACATCCGCTGA

Translation (597 aa):
MVQKSGMSRGPYPPSQEIPMEVFDPSPQGKYSKRKGRFKRSDGSTSSDTTSNSFVRQGSAESYTSRPSDS
DVSLEEDREALRKEAERQALAQLEKAKTKPVAFAVRTNVGYNPSPGDEVPVQGVAITFEPKDFLHIKEKY
NNDWWIGRLVKEGCEVGFIPSPVKLDSLRLLQEQTLRQNRLSSSKSGDNSSSSLGDVVTGTRRPTPPASA
KQKQKSTEHVPPYDVVPSMRPIILVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSV
LNNPSKHIIIERSNTRSSLAEVQSEIERIFELARTLQLVALDADTINHPAQLSKTSLAPIIVYIKITSPK
VLQRLIKSRGKSQSKHLNVQIAASEKLAQCPPEMFDIILDENQLEDACEHLAEYLEAYWKATHPPSSTPP
NPLLNRTMATAALAASPAPVSNLQGPYLASGDQPLDRATGEHASVHEYPGELGQPPGLYPSNHPPGRAGT
LRALSRQDTFDADTPGSRNSAYTEPGDSCVDMETDPSEGPGPGDPAGGGTPPARQGSWEDEEDYEEEMTD
NRNRGRNKARYCAEGGGPVLGRNKNELEGWGQGVYIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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