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Report for CCDS25305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25305.1 Public Mus musculus 11 Copz2 23 108 98 CCDS HistoryNCBI Gene:56358Re-query CCDS DB by CCDS ID:25305.1Re-query CCDS DB by GeneID:56358See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25305.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018816.13 ENSMUSP00000018816.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018816.13Link to Ensembl Protein Viewer:ENSMUSP00000018816.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018816Re-query CCDS DB by Protein ID:ENSMUSP00000018816
Original member Current member NCBI NM_019877.2 NP_063930.1 Accepted alive Link to Nucleotide Sequence:NM_019877.2Link to Protein Sequence:NP_063930.1Re-query CCDS DB by Nucleotide ID:NM_019877Re-query CCDS DB by Protein ID:NP_063930Link to BLAST:NP_063930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063930.1 205 Q9JHH9 205 100% 0 0

Chromosomal Locations for CCDS 25305.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96849895 96849996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96850673 96850741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96853435 96853516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96854058 96854149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96854584 96854639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96855256 96855333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96856672 96856723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96857553 96857591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96860863 96860910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGCAGCGGCCGGAGGCCTGGCCACGTCCGCACCCGGGGGAGGGGGCCTCAGCCGCCCAAGCCGGGGGCG
CAGCGCCGCCCACCCGAGCCACGGAACAGCGGGAACCTTCTCTCTACACCATCAAGGCTGTCTTCATCTT
AGATAATGACGGGCGAAGGCTGCTGGCCAAGTATTATGACGACACATTTCCCTCCGTGAAGGAGCAGATG
GTTTTCGAGAAAAATGTCTTCAACAAGACCAGCCGCACCGAAAGTGAAATTGCATTTTTGGGGGGCATGA
CTATCGTCTACAAGAGCAGCATTGACATCTTCCTGTATGTGGTGGGATCTTCCTCCGAGAATGAGCTGAT
GCTCATGTCTGTGCTTGCCTGCCTGTTTGACTCTCTGAGCCACATCTTAAGGAAGAACGTGGAGAAACGC
TGGTTGCTGGAGAACATGGACGGAGCCTTCTTGGTGCTGGATGAAACTGTCGATGGAGGTGTGATTCTGG
AGAGCGACCCCCAGCAAGTGATCCAGAAAGTGAATTTTAGGACTGATGACAGTGGCCTAACAGAACAGAG
TGTGGCCCAGGTTCTTCAGTCAGCCAAGGAACAGATTAAATGGTCGCTATTGAAATGA

Translation (205 aa):
MQRPEAWPRPHPGEGASAAQAGGAAPPTRATEQREPSLYTIKAVFILDNDGRRLLAKYYDDTFPSVKEQM
VFEKNVFNKTSRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKR
WLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSGLTEQSVAQVLQSAKEQIKWSLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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