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Report for CCDS25292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25292.1 Public Mus musculus 11 Hoxb9 23 108 98 CCDS HistoryNCBI Gene:15417Re-query CCDS DB by CCDS ID:25292.1Re-query CCDS DB by GeneID:15417See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000010.8 ENSMUSP00000000010.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000010.8Link to Ensembl Protein Viewer:ENSMUSP00000000010.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000010Re-query CCDS DB by Protein ID:ENSMUSP00000000010
Original member Current member NCBI NM_008270.2 NP_032296.2 Accepted alive Link to Nucleotide Sequence:NM_008270.2Link to Protein Sequence:NP_032296.2Re-query CCDS DB by Nucleotide ID:NM_008270Re-query CCDS DB by Protein ID:NP_032296Link to BLAST:NP_032296.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032296.2 250 P20615 250 100% 0 0

Chromosomal Locations for CCDS 25292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96271542 96272058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96274624 96274859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCCATTTCTGGGACGCTTAGCAGCTATTATGTCGACTCGATCATAAGTCACGAGAGCGAGGACGCGC
CTCCAGCCAAGTTTCCTTCGGGCCAGTACGCGAACCCGCGGCAGCCGGGCCACGCCGAGCACCTGGACTT
CCCCTCGTGCAGCTTCCAGCCCAAAGCGCCGGTGTTCGGCGCCTCCTGGGCGCCGCTGAGCCCGCACGCC
TCGGGGAGCCTGCCGTCTGTCTACCACCCCTACCTGCAGCCCCAGGGCGCGCCGGCGGCCGAAAGCAGGT
ACCTCCGCACCTGGCTAGAGCCGGCGCCGCGCGCCGAGGCCGCCCCGGGGCAGGGCCAGGCGGCCGTGAA
GGCGGAGCCGCTGCTGGGCGCGCCGGGGGAGCTGCTCAAACAGGGCACGCCCGAGTACAGTTTGGAAACT
TCGGCGGGCAGGGAGGCTGTCCTGTCTAATCAAAGAGCTGGCTACGGGGACAATAAAATTTGCGAAGGAA
GCGAGGACAAAGAGAGGCCGGATCAAACCAACCCCTCTGCCAACTGGCTGCACGCCCGCTCTTCCCGGAA
AAAGCGCTGTCCCTACACCAAATACCAGACGCTGGAGCTAGAGAAGGAGTTTCTGTTCAATATGTACCTC
ACCAGGGACCGCAGGCATGAAGTGGCCAGACTCCTCAATCTGAGTGAGAGACAAGTCAAAATCTGGTTTC
AGAACCGGCGGATGAAAATGAAGAAGATGAATAAGGAGCAGGGCAAAGAGTAA

Translation (250 aa):
MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYANPRQPGHAEHLDFPSCSFQPKAPVFGASWAPLSPHA
SGSLPSVYHPYLQPQGAPAAESRYLRTWLEPAPRAEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLET
SAGREAVLSNQRAGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYL
TRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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