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Report for CCDS25242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25242.1 Public Mus musculus 11 Stxbp4 23 108 98 CCDS HistoryNCBI Gene:20913Re-query CCDS DB by CCDS ID:25242.1Re-query CCDS DB by GeneID:20913See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143203.7 ENSMUSP00000116191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143203.7Link to Ensembl Protein Viewer:ENSMUSP00000116191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143203Re-query CCDS DB by Protein ID:ENSMUSP00000116191
Original member NCBI NM_011505.2 NP_035635.1 Updated not alive Link to Nucleotide Sequence:NM_011505.2Link to Protein Sequence:NP_035635.1Re-query CCDS DB by Nucleotide ID:NM_011505Re-query CCDS DB by Protein ID:NP_035635
Current member NCBI NM_011505.3 NP_035635.1 Accepted alive Link to Nucleotide Sequence:NM_011505.3Link to Protein Sequence:NP_035635.1Re-query CCDS DB by Nucleotide ID:NM_011505Re-query CCDS DB by Protein ID:NP_035635Link to BLAST:NP_035635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035635.1 557 Q9WV89-1 557 100% 0 0

Chromosomal Locations for CCDS 25242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 90480600 90480714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90494602 90494659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90535480 90535613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90537911 90537960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90540166 90540282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90548811 90548987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90571722 90571787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90575250 90575339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90592332 90592423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90594745 90594841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90600186 90600280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90605953 90606031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90606968 90607184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90607345 90607451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90619183 90619315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90621655 90621701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGAGTGATGGTACAGCTTCTGCCCGATCATCCAGCCCACTTGACAGGGATCCTGCCTTTCGGGTGATTA
CAGTTACTAAGGAAACAGGTCTAGGTCTGAAGATCCTAGGCGGAATTAACAGGAATGAAGGACCGCTGGT
GTATATTCACGAAGTCATTCCTGGAGGTGACTGTTACAAGGATGGACGTTTGAAGCCAGGAGATCAACTT
GTCTCAATAAACAAGGAATCTATGATTGGTGTATCATTTGAAGAAGCAAAAAGCATAATTACCAGAGCCA
AGTTGAGGTCAGAATCTCCCTGGGAGATAGCATTCATCAGACAAAAGTCTTACTGTGGCCATCCAGGAAA
TATTTGCTGTCCATCCCCACAAGTGTCAGAAGACTGTGGACCTCAAACCTCAACATTTACTCTTCTTTCC
TCTCCCTCTGAAACACTACTTCCAAAGACTTCATCCACTCCCCAGACTCAGGACTCCACTTTCCCTTCTT
GTAAAGCAATTCAGACAAAACCTGAACACGATAAAACAGAACATAGTCCAATTACTTCTTTGGACAACAG
CCCTGCAGATACATCTAATGCAGACATTGCTCCAGCCTGGACTGATGATGATTCTGGACCACAAGGAAAG
ATTTCCCTAAATCCTTCTGTTCGCCTTAAGGCAGAGAAACTGGAAATGGCTCTCAATTACCTCGGTATAC
AGCCAACAAAGGAACAACGTGAAGCCCTGAGAGAGCAAGTCCAGGCCGACTCAAAGGGGACTGTGTCTTT
TGGAGATTTCGTCCAGGTTGCCAGAAGTTTGTTTTGCTTGCAGTTGGATGAAGTAAATGTTGGTGTCCAT
GAAATCCCCAGCATCTTAGACTCACAGCTTCTCCCCTGTGATTCTCTAGAAGCAGATGAAGTGGGAAAAC
TTAGACAAGAAAGAAACGCTGCTCTAGAGGAACGGAATGTGCTTAAGGAGAAGTTACTGGAATCAGAAAA
GCACAGGAAACAATTGATAGAAGAACTCCAGAATGTGAAGCAGGAAGCCAAAGCTGTAGCTGAGGAAACC
CGAGCTCTGCGAAGCCGGATTCATCTCGCAGAAGCTGCACAGCGGCAGGCACACGGGATGGAAATGGATT
ATGAAGAGGTGATCCGTCTGCTAGAGGCTGAGGTCTCAGAACTAAAGGCTCAGCTCGCTGATTATTCTGA
CCAAAATAAAGAAAGTGTCCAGGACTTGAGAAAAAGAGTCACCGTTCTTGACTGCCAATTGCGAAAATCA
GAAATGGCTCGGAAAGCATTCAAGGCGTCCACTGAAAGGCTCCTTGGTTTCATAGAGGCTATTCAAGAAG
TTCTTTTGGATAGTTCTGCTCCTTTATCAACTTTAAGTGAAAGAAGAGCTGTGCTCGCATCTCAGACTTC
GCTTCCACTGCTGGCAAGGAACGGACGCAGCTTCCCAGCAACCCTGCTTCTGGAATCCAAGGAGCTTGTC
AGATCTGTCCGTGCCATACTTGATATGGACTGCTTACCTTACGGGTGGGAGGAAGCTTACACAGCAGATG
GAATCAAGTACTTCATCAACCACGTGACACAGACCACGTCCTGGATCCACCCCGTGATGAGCGCCCTGAA
CCTGTCCTGTGCAGAGGAGAGTGAAGAGGACTGTCCCAGAGAGCTAACAGACCCGAAAAGCTGA

Translation (557 aa):
MSDGTASARSSSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQL
VSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRQKSYCGHPGNICCPSPQVSEDCGPQTSTFTLLS
SPSETLLPKTSSTPQTQDSTFPSCKAIQTKPEHDKTEHSPITSLDNSPADTSNADIAPAWTDDDSGPQGK
ISLNPSVRLKAEKLEMALNYLGIQPTKEQREALREQVQADSKGTVSFGDFVQVARSLFCLQLDEVNVGVH
EIPSILDSQLLPCDSLEADEVGKLRQERNAALEERNVLKEKLLESEKHRKQLIEELQNVKQEAKAVAEET
RALRSRIHLAEAAQRQAHGMEMDYEEVIRLLEAEVSELKAQLADYSDQNKESVQDLRKRVTVLDCQLRKS
EMARKAFKASTERLLGFIEAIQEVLLDSSAPLSTLSERRAVLASQTSLPLLARNGRSFPATLLLESKELV
RSVRAILDMDCLPYGWEEAYTADGIKYFINHVTQTTSWIHPVMSALNLSCAEESEEDCPRELTDPKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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