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Report for CCDS25095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25095.1 Public Mus musculus 11 Supt6 23 108 98 CCDS HistoryNCBI Gene:20926Re-query CCDS DB by CCDS ID:25095.1Re-query CCDS DB by GeneID:20926See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002121.4 ENSMUSP00000002121.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002121.4Link to Ensembl Protein Viewer:ENSMUSP00000002121.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000002121Re-query CCDS DB by Protein ID:ENSMUSP00000002121
Original member Current member NCBI NM_009297.2 NP_033323.2 Accepted alive Link to Nucleotide Sequence:NM_009297.2Link to Protein Sequence:NP_033323.2Re-query CCDS DB by Nucleotide ID:NM_009297Re-query CCDS DB by Protein ID:NP_033323Link to BLAST:NP_033323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033323.2 1726 Q62383 1726 100% 0 0

Chromosomal Locations for CCDS 25095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78207583 78207769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78208050 78208237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78208852 78209018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78209102 78209179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78209424 78209536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78211797 78211921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78212083 78212196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78212669 78212907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78213267 78213462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78216205 78216345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78217841 78217983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78219168 78219315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78219883 78220090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78221121 78221248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78222110 78222277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78222348 78222485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78222770 78222905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78223154 78223230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78224366 78224483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78224596 78224735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78225307 78225502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78225664 78225818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78225947 78226097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78226180 78226309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78226675 78226773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78226891 78227039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78228629 78228771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78228954 78229043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78229397 78229513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78230166 78230267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78230928 78231201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78231773 78231857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78232018 78232210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78232505 78232581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78232675 78232833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78233545 78233653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5181 nt):
ATGTCTGATTTTGTGGAAAGTGAGGCCGAAGAGTCAGAAGAAGAATACAATCATGAAGGCGAGGTGGTAC
CTAGAGTCACCAAGAAGTTTGTGGAAGAGGAGGATGATGATGAGGAGGAGGAAGAGGAGAATCTAGATGA
TCAAGATGAGCGAGGCAACCTCAAAGACTTTATCAATGACGATGATGATGAAGAAGAAGGGGAGGAGGAT
GAGGGCAGCGACTCTGGGGACTCAGAAGACGATGTTGGCCACAAGAAGAGAAAACGCCCATCTTTTGATG
ACCGCCTGGAAGATGATGATTTTGACCTCATTGAGGAGAATTTGGGTGTTAAAGTCAAACGAGGACAAAA
ATACCGACGTGTCAAAAAAATGTCTGATGATGATGAAGATGATGAAGAGGAATATGGCAAAGAGGAACAC
GAGAAGGAGGCCATTGCAGGGGAAATCTTCCAAGATGAAGAAGGGGAAGAAGGCCAGGAGGCTGTAGAGG
CCCCCATGGCCCCTCCTGACGAGGAGGAGGAAGATGATGAGGAGTCAGACATTGACGATTTCATTGTGGA
TGATGATGGACAGCCTCTGAAAAAACCCAAATGGCGAAAAAAGCTCCCTGGATATACAGATGCAGCCCTG
CAGGAAGCCCAGGAGATCTTCGGTGTGGACTTTGACTATGATGAATTTGAGAAATACAATGAATACGATG
AAGAACTGGAAGAAGACTATGAGTACGAGGATGATGAGACTGAAGGTGAGATCCGAGTGCGCCCCAAGAA
GACCACCAAGAAACGTGTGAGTCGCAGGAGCATCTTTGAGATGTACGAGCCTAGTGAGCTGGAGAGCAGC
CACCTCACAGACCAGGACAATGAAATCCGAGCCACTGACTTGCCTGAGAGGTTCCAGCTCCGCTCCATCC
CAGTCAAGGCAGCTGAGGATGATGAGCTAGAAGAGGAAGCTGACTGGATCTATAGAAATGCCTTCGCAAC
ACCGACCATCTCCCTCCAGGACAGCTGTGATTACCTAGACCGTGGGCAGCCAACTAGTAGCTTCAGTCGT
AAAGGGCCCAGCACAGTTCAGAAGATCAAAGAGGCCCTGGGCTTCATGCGGAATCAGCATTTTGAGGTGC
CTTTCATTGCCTTCTACCGAAAGGAGTATGTGGAACCTGAGCTGCACATCAATGACCTGTGGAGGGTGTG
GCAGTGGGATGAGAAGTGGACTCAGCTGAGAATCCGCAAAGAGAACCTAACACGGCTGTTTGAGAAGATG
CAGGCTTATCAGTATGAGCAAATCTCTGCTGACCCTGACAAACCTCTTGCTGACGGCATCCGGGCTCTAG
ATACTACTGACATGGAGAGGCTCAAAGATGTTCAGTCAATGGATGAACTGAAAGACGTCTACAACCATTT
CTTACTTTACTACGGGCGTGACATCCCCAAGATGCAGAATGCTGCCAAGGCTAGCCGGAAGAAGCTGAAA
CGCATAAAGGAGGATGGCGATGAAGAAGGTGAAGGTGAGGAGGCTGAAGATGAGGAACAGAGGGGACCAG
AGCTCAAGCAAGCCTCCCGCCGAGACATGTATACCATCTGCCAGAGTGCCGGGCTAGATGGCCTGGCCAA
AAAGTTTGGCCTCACACCTGAGCAGTTTGGGGAGAACCTCCGTGACAGCTACCAGCGCCACGAGACAGAG
CAGTTCCCTGCAGAGCCTTTGGAGCTGGCCAAAGATTACGTGTGCAGCCAGTTCCCTACACCAGAAGCTG
TGCTTGAAGGTGCCCGATACATGGTTGCACTACAGATTGCCAGGGAGCCCCTTGTCAGACAGGTGCTGAG
ACAAACCTTTCAGGAGAGAGCCAAGCTAAACATAACCCCAACCAAGAAAGGTAGAAAGGATGTGGATGAG
GCCCACTACGCTTACTCTTTTAAGTACTTAAAGAACAAGCCTGTTAAAGAGCTGAGAGACGACCAGTTCC
TCAAGATAGGCCTGGCTGAGGATGAAGGGCTGCTCACCATTGACATCAGCATAGATATGAAGGGAGTGGA
AGGGTATGGTAATGACCAGACATATTTTGAGGAGATCAAGCAGTTTTACTACCGGGATGAGTTCAGCCAC
CAAGTACAGGAATGGAACCGGCAGCGCACTATGGCCATTGAGCGAGCTCTGCAGCAGTTCCTCTACGTGC
AAATGGCCAAAGAACTTAAGAACAAGCTGCTAGCTGAGGCCAGGGAGAGTGTTGTGAAGGCCTGTAGCCG
AAAGCTCTACAACTGGTTGAGAGTGGCACCCTACCGTCCAGATCAGCAGGTAGAGGAGGACGACGACTTT
ATGGATGAGAACCAGGGGAAGGGCATCCGAGTCCTAGGCATTGCTTTCTCCTCTGCCAGAGATCACCCTG
TGTTCTGTGCCCTAGTCAATGGTGAAGGAGAAGTGACTGATTTCCTCCGCCTGCCCCATTTTACCAAGCG
GCGAACTGCATGGAGAGAAGAGGAGCGGGAAAAGAAGGCTCAAGATATTGAAACCCTAAAGAAGTTTCTT
GTGAATAAGAAGCCTCATGTGGTCACTATCGCAGGAGAGAACAGGGATGCCCAGATGCTGACTGAGGATG
TGAAGCGGATAGTGCATGAGCTGGACCAAGGCCAACAGCTGTCTTCTATTGGGGTGGAGCTGGTTGACAA
TGAGCTGGCCATTCTGTACATGAACAGCAAGAAATCAGAGGCAGAGTTCCGGGATTATCCACCAGTTTTG
AGACAAGCTGTCTCTCTAGCCCGGCGTATCCAAGACCCTCTGATAGAATTTGCCCAGGTGTGCAGCTCAG
ATGAAGACATCCTGTGTCTCAAGTTTCATCCCTTGCAGGAGCATGTTGTGAAAGAGGAGCTGCTTAACGC
CTTGTACTGTGAATTCATCAACCGGGTCAATGAGGTCGGGGTGGATGTCAACCGTGCCATTGCCCATCCT
TACAGCCAGGCCTTGATCCAGTATGTCTGTGGCCTGGGACCCCGAAAAGGGACCCACCTGCTGAAGATTT
TGAAACAGAACAACACTCGACTCGAGAGCCGGACTCAGCTGGTCACCATGTGTCATATGGGTCCCAAAGT
CTTCATGAATTGTGCTGGCTTCCTCAAGATCGACACTGCTTCTCTGGGGGACAGCACTGACTCATACATT
GAAGTTCTTGATGGCTCTCGAGTCCACCCTGAAACGTACGAGTGGGCCAGGAAGATGGCAGTGGATGCCT
TAGAATACGATGAGTCTGCAGAAGATGCCAATCCTGCTGGAGCCCTTGAGGAAATCTTGGAAAACCCAGA
GCGGCTGAAGGATTTAGATCTTGATGCCTTTGCAGAAGAACTAGAGAGACAGGGCTATGGTGACAAGCAC
ATCACACTGTATGACATCCGAGCAGAGCTCAGTTGTAGGTATAAGGACCTCCGGACAGCCTACCGCTCTC
CTAACACAGAGGAGATCTTCAATATGTTAACCAAAGAGACGCCAGAGACCTTCTACATTGGAAAGCTTAT
CATCTGCAATGTTACCGGCATTGCTCACAGGCGCCCACAGGGTGAGAGCTATGACCAGGCCATCCGAAAT
GATGAGACAGGGCTGTGGCAGTGCCCCTTCTGTCAACAAGACAACTTCCCTGAGCTAAGCGAGGTCTGGA
ACCATTTTGACAGTGGATCATGCCCTGGTCAGGCCATTGGTGTGAAAACACGGCTAGACAATGGCGTCAC
CGGCTTCATCCCTACCAAATTCCTCAGTGACAAGGTGGTGAAGAGGCCAGAGGAGCGAGTGAAGGTGGGG
ATGACTGTTCACTGCCGGATCATGAAGATCGATATTGAAAAGTTCAGTGCAGACCTGACCTGCCGGACCT
CAGACCTCATGGACAGGAACAATGAGTGGAAACTGCCCAAGGACACCTACTATGACTTTGATGCGGAAGC
TGCAGACCACAAGCAGGAAGAGGATATGAAACGAAAGCAGCAGCGGACCACATACATCAAGCGAGTGATT
GCACACCCGTCCTTCCATAACATAAATTTCAAGCAAGCAGAAAAGATGATGGAGACCATGGACCAAGGGG
ATGTTATCATTCGGCCCAGCAGTAAAGGTGAAAACCATCTGACGGTGACCTGGAAAGTCAGTGCTGGCAT
CTACCAGCACGTGGACGTGCGGGAAGAGGGCAAGGAGAACGCCTTCAGCCTGGGAGCCACTCTTTGGATC
AACAGTGAGGAATTTGAAGACTTGGATGAGATTGTTGCCCGCTATGTCCAGCCCATGGCTTCCTTTGCTC
GAGACCTTCTGAACCACAAATATTACCAGGACTGTAGTGGTGGGGACCGAAAGAAATTAGAGGAGCTGCT
CATCAAAACTAAGAAGGAGAAGCCCACCTTCATCCCTTACTTCATCTGTGCCTGCAAGGAGCTGCCCGGC
AAGTTCCTCCTGGGATACCAGCCCCGGGGTAAACCCAGGATAGAATATGTAACAGTGACTCCTGAAGGAT
TCCGGTACCGGGGCCAGATTTTCCCAACTGTGAATGGACTCTTCAGGTGGTTTAAGGATCACTATCAGGA
TCCTGTACCAGGCATCACTCCCAGTAGCAGTAACAGAACACGGACCCCTGCTTCTATCAATGCTACCCCA
GCCAACATCAATCTTGCAGATCTCACACGGGCTGTGAATGCCTTGCCTCAGAACATGACTTCACAGATGT
TCAGTGCCATTGCTGCTGTGACAGGCCAGGGGCAGAACCCCAATGCTACCCCAGCCCAGTGGGCATCCAG
CCAGTATGGCTACGGTGGCAGCGGAGGAGGCAGCAGCGCCTACCATGTGTTCCCAACACCAGCCCAGCAG
CCAGTGGCCACACCACTAATGACCCCAAGCTACTCCTATACTACCCCGAGCCAGCCCATTACCACCCCAC
AATACCACCAGCTCCAGGCCAGCACCACCCCACAGTCTACACAGGCCCAGCCCCAGCCTTCCTCCAGCTC
CCGACAACGGCAACAGCAGCCAAAGTCCAACAGCCATGCAGCTATCGACTGGGGCAAGATGGCCGAGCAG
TGGCTACAGGAAAAGGAGGCAGAACGACGGAAACAGAAACAGCGGCTGACCCCACGACCCTCTCCCAGCC
CCATGATCGAGAGCACCCCCATGTCCATTGCTGGCGATGCGACCCCACTCCTGGACGAGATGGATCGGTA
G

Translation (1726 aa):
MSDFVESEAEESEEEYNHEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDERGNLKDFINDDDDEEEGEED
EGSDSGDSEDDVGHKKRKRPSFDDRLEDDDFDLIEENLGVKVKRGQKYRRVKKMSDDDEDDEEEYGKEEH
EKEAIAGEIFQDEEGEEGQEAVEAPMAPPDEEEEDDEESDIDDFIVDDDGQPLKKPKWRKKLPGYTDAAL
QEAQEIFGVDFDYDEFEKYNEYDEELEEDYEYEDDETEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESS
HLTDQDNEIRATDLPERFQLRSIPVKAAEDDELEEEADWIYRNAFATPTISLQDSCDYLDRGQPTSSFSR
KGPSTVQKIKEALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
QAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQNAAKASRKKLK
RIKEDGDEEGEGEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETE
QFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDE
AHYAYSFKYLKNKPVKELRDDQFLKIGLAEDEGLLTIDISIDMKGVEGYGNDQTYFEEIKQFYYRDEFSH
QVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEARESVVKACSRKLYNWLRVAPYRPDQQVEEDDDF
MDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
VNKKPHVVTIAGENRDAQMLTEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVL
RQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHP
YSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYI
EVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKH
ITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRN
DETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
MTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVI
AHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSAGIYQHVDVREEGKENAFSLGATLWI
NSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPG
KFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSNRTRTPASINATP
ANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQ
PVATPLMTPSYSYTTPSQPITTPQYHQLQASTTPQSTQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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