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Report for CCDS25064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25064.1 Public Mus musculus 11 Nxn 23 108 98 CCDS HistoryNCBI Gene:18230Re-query CCDS DB by CCDS ID:25064.1Re-query CCDS DB by GeneID:18230See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021204.3 ENSMUSP00000021204.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021204.3Link to Ensembl Protein Viewer:ENSMUSP00000021204.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021204Re-query CCDS DB by Protein ID:ENSMUSP00000021204
Original member Current member NCBI NM_008750.5 NP_032776.1 Accepted alive Link to Nucleotide Sequence:NM_008750.5Link to Protein Sequence:NP_032776.1Re-query CCDS DB by Nucleotide ID:NM_008750Re-query CCDS DB by Protein ID:NP_032776Link to BLAST:NP_032776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032776.1 435 P97346-1 435 100% 0 0

Chromosomal Locations for CCDS 25064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76258565 76258747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76261542 76261666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76263008 76263187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76272376 76272482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76273971 76274071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76274515 76274648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76278474 76278591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76398701 76399060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGTCGGGCTTCCTGGAGGAGCTGCTGGGAGACAAGCTGGTGACGGGCGGTGGCGAGGAGGTGGACGTGC
ATTCGCTGGGCGCCCGCGGCATCGCGCTGCTGGGGCTCTACTTCGGGTGCAGCCTGAGCGCCCCCTGCGC
GCAGCTCAGCGCCAGCCTGGCCGCCTTCTACGGTCGCCTGCGAGGGGACGCGGCGGCCGGGCCGGGGGCC
GGGGCGGGGGCCGGCGCAGCCGCGGAGCCAGAGCCCCGGCACCGCCTGGAGATCGTCTTCGTGTCTTCGG
ACCAAGACCAGCGGCAGTGGCAGGACTTCGTGCGGGACATGCCATGGCTGGCGCTGCCCTACAAGGAGAA
GCACCGGAAGCTTAAACTTTGGAACAAATACCGAGTCTCCAACATTCCATCGCTAATATTCCTAGACGCC
ACCACAGGGAAGGTTGTGTGCAGGAATGGGCTCCTGGTGATCCGAGATGACCCGGAAGGTCTGGAATTCC
CTTGGGGACCTAAACCCTTCCGGGAAGTTATTGCGGGGCCCTTGCTTAGAAATAACGGGCAGTCGCTGGA
GAGCAGCAGCCTGGAGGGGTCTCACGTGGGAGTCTATTTCTCTGCACACTGGTGTCCACCCTGCCGAAGC
CTTACCAGAGTGCTGGTGGAATCCTACCGGAAGATCAAGGAGGCAGGCCAGGAGTTTGAGATCATCTTCG
TTAGTGCAGACAGGTCAGAGGAGTCTTTCAAACAGTACTTTAGTGAGATGCCATGGCTCGCTGTCCCCTA
CACTGATGAGGCCCGGCGGTCTCGTCTCAACCGACTGTATGGAATCCAAGGCATCCCCACGCTCATCGTG
CTGGACCCGCAGGGGGAGGTGATCACTCGGCAGGGTCGGGTGGAGGTGCTCAATGACGAGGACTGCAGGG
AGTTCCCGTGGCACCCGAAGCCCGTGCTGGAGCTCTCTGACTCCAACGCTGTGCAGCTCAACGAGGGCCC
CTGCCTCGTCCTTTTTGTAGACTCTGAGGACGACGGAGAGTCCGAGGCAGCCAAACAGCTGATCCAGCCA
ATAGCTGAGAAGATCATTGCCAAGTACAAAGCCAAAGAAGAGGAGGCGCCGCTGTTGTTCTTTGTGGCCG
GGGAGGATGACATGACTGACTCCCTGAGAGATTACACCAACCTGCCTGAGGCGGCGCCTCTGCTCACCAT
TCTGGACATGTCAGCCCGGGCCAAGTACGTGATGGATGTAGAAGAGATCACCCCAGCCATTGTGGAGACT
TTTGTGAATGACTTCCTAGCAGAAAAACTCAAGCCTGAGCCCATCTAG

Translation (435 aa):
MSGFLEELLGDKLVTGGGEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGA
GAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVSNIPSLIFLDA
TTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRS
LTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIV
LDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLIQP
IAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVET
FVNDFLAEKLKPEPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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