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Report for CCDS25051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25051.1 Public Mus musculus 11 Slc43a2 23 108 98 CCDS HistoryNCBI Gene:215113Re-query CCDS DB by CCDS ID:25051.1Re-query CCDS DB by GeneID:215113See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042561.13 ENSMUSP00000046074.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042561.13Link to Ensembl Protein Viewer:ENSMUSP00000046074.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042561Re-query CCDS DB by Protein ID:ENSMUSP00000046074
Original member Current member EBI ENSMUST00000108433.7 ENSMUSP00000104071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108433.7Link to Ensembl Protein Viewer:ENSMUSP00000104071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108433Re-query CCDS DB by Protein ID:ENSMUSP00000104071
Original member Current member EBI ENSMUST00000169547.8 ENSMUSP00000126838.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169547.8Link to Ensembl Protein Viewer:ENSMUSP00000126838.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169547Re-query CCDS DB by Protein ID:ENSMUSP00000126838
Original member Current member NCBI NM_001199283.1 NP_001186212.1 Accepted alive Link to Nucleotide Sequence:NM_001199283.1Link to Protein Sequence:NP_001186212.1Re-query CCDS DB by Nucleotide ID:NM_001199283Re-query CCDS DB by Protein ID:NP_001186212Link to BLAST:NP_001186212.1
Original member Current member NCBI NM_001199284.1 NP_001186213.1 Accepted alive Link to Nucleotide Sequence:NM_001199284.1Link to Protein Sequence:NP_001186213.1Re-query CCDS DB by Nucleotide ID:NM_001199284Re-query CCDS DB by Protein ID:NP_001186213Link to BLAST:NP_001186213.1
Original member Current member NCBI NM_173388.2 NP_775564.1 Accepted alive Link to Nucleotide Sequence:NM_173388.2Link to Protein Sequence:NP_775564.1Re-query CCDS DB by Nucleotide ID:NM_173388Re-query CCDS DB by Protein ID:NP_775564Link to BLAST:NP_775564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186212.1 568 Q8CGA3 568 100% 0 0
NP_001186213.1 568 Q8CGA3 568 100% 0 0
NP_775564.1 568 Q8CGA3 568 100% 0 0

Chromosomal Locations for CCDS 25051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75532629 75532788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75543158 75543365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75544682 75544737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75545754 75545830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75560899 75560991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75562772 75562905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75562991 75563193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75563562 75563708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75566979 75567117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75568361 75568490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75570571 75570644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75571757 75571880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75572315 75572476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGCGCCCACCCTGGCCACTGCCCATCGGCGCCGCTGGTGGATGGCCTGCACCGCTGTGTTGGAAAACC
TCCTTTTCTCCGCAGTCCTCCTGGGCTGGGGTTCGCTGCTCATCATGCTCAAGTCCGAGGGCTTTTACTC
CTACCTGTGTACGAAGCCAGAGAATGTCACTAACAGCACGGTCGGGGGCAGCGCAGAGCCGGAACCCGAG
GAGTTGAGCCTGGTGAATGGCTGGCTCAGCTGTAAGGCCCAGGATGAGATTCTGAATTTGGCCTTCACCG
TGGGCTCCTTCCTGCTCAGTGCCATCACCCTGCCTCTGGGCATCATCATGGACAAGTATGGTCCAAGGAA
GCTCAGGCTGCTGGGCAGTGCTTGCTTTGCTGTCTCCTGCTTGCTGATTGCATATGGAGCAAGTAACCCA
GACTCGCTCTCTGTGCTCATCTTTATCGCCTTGGCTCTGAACGGCTTTGGGGGGATGTGCATGACGTTCA
CTTCGTTAACACTGCCCAATATGTTCGGCGACCTTCGGTCCACATTTATTGCCTTGATGATTGGATCCTA
CGCTTCCTCAGCAGTTACCTTCCCAGGAATAAAGCTCATCTACGACGCTGGCGCCTCCTTCATTGGCATC
CTAGTGGTCTGGGCTGGCTGCTCTGGCCTGGTTTTTTTCAACTGTTTCTTCAACTGGCCACTCGAGCCCT
TCCCAGGCCCAGAGGACATGGACTACTCGGTGAAGATCAAGTTCAGCTGGCTAGGCTTTGACCACAAGAT
CACAGGGAAGCAGTTCTACAAGCAGGTGACCACAGTGGGGCGCCGTCTGAGCGTGGGCAGCTCTATGCGG
ACTGCCAAGGAGCAAGCCGCCCTGCAGGAGGGCCACAAGCTGTGTCTGTCCACTGTGGACCTGGAGGTGA
AGTGCCAGCCTGATGCTGCAGCGGCCCCATCGTTTATGCACAGTGTGTTCAGCCCCCTCCTGGTGCTCAG
CCTGGTCACCATGTGTGTCACACAGCTGCGACTTATCTTCTACATGGGGGCTATGAACAGCATCCTTGAG
TTCCTGGTCAGGGGGGACCAGAAGACAGTTGCCCTCTATACCTCCATCTTTGGCGCACTCCAGCTGCTCT
GCCTGCTGACAGCTCCTGTCATCGGCTACATCATGGACTGGAAGCTGAAAGAGTGTGAAGATACTTCAGA
GGAGCCTGAGGAGAAAGAAGGCACTCAAGGTGAAAAGAAGCAGAAACGAGACAGGCAGATTCAGAAAGTC
ACGAATGCCATGCGGGCCTTCGCCTTTACAAACGTGCTGCTTGTGGGTTTTGGGGTGACCTGCCTCATTC
CCAACCTGCCTCTACAGATCTTCTCCTTCGTCCTGCACACAATTGTGCGAGGATTCATCCACTCTGCCGT
AGGGGGCCTATACGCTGCCGTGTACCCCTCCACACAGTTTGGTAGCCTCACTGGACTGCAGTCCCTGGTC
AGTGCGCTCTTTGCTCTCCTGCAGCAGCCGCTGTATCTGGCCATGATGGGTCCTCTGGGAGGAGACCCTC
TGTGGGTGAACGTGGGTCTGCTCGCCATGAGCATGCTGGGCTTCTGCCTGCCCCTTTACCTCATCTGCTA
CCGGCGCCAGCTGGAGAGGCAGCTGCAGCAGAAGAGGGAAGACAGCAAGCTGTTCCTTAAGATCAATGGC
TCATCCAACCGGGAGGCTTTCGTGTAG

Translation (568 aa):
MAPTLATAHRRRWWMACTAVLENLLFSAVLLGWGSLLIMLKSEGFYSYLCTKPENVTNSTVGGSAEPEPE
ELSLVNGWLSCKAQDEILNLAFTVGSFLLSAITLPLGIIMDKYGPRKLRLLGSACFAVSCLLIAYGASNP
DSLSVLIFIALALNGFGGMCMTFTSLTLPNMFGDLRSTFIALMIGSYASSAVTFPGIKLIYDAGASFIGI
LVVWAGCSGLVFFNCFFNWPLEPFPGPEDMDYSVKIKFSWLGFDHKITGKQFYKQVTTVGRRLSVGSSMR
TAKEQAALQEGHKLCLSTVDLEVKCQPDAAAAPSFMHSVFSPLLVLSLVTMCVTQLRLIFYMGAMNSILE
FLVRGDQKTVALYTSIFGALQLLCLLTAPVIGYIMDWKLKECEDTSEEPEEKEGTQGEKKQKRDRQIQKV
TNAMRAFAFTNVLLVGFGVTCLIPNLPLQIFSFVLHTIVRGFIHSAVGGLYAAVYPSTQFGSLTGLQSLV
SALFALLQQPLYLAMMGPLGGDPLWVNVGLLAMSMLGFCLPLYLICYRRQLERQLQQKREDSKLFLKING
SSNREAFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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