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Report for CCDS24994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24994.1 Public Mus musculus 11 Ncbp3 23 108 98 CCDS HistoryNCBI Gene:66874Re-query CCDS DB by CCDS ID:24994.1Re-query CCDS DB by GeneID:66874See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021135.4 ENSMUSP00000021135.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021135.4Link to Ensembl Protein Viewer:ENSMUSP00000021135.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021135Re-query CCDS DB by Protein ID:ENSMUSP00000021135
Original member Current member NCBI NM_025818.3 NP_080094.3 Accepted alive Link to Nucleotide Sequence:NM_025818.3Link to Protein Sequence:NP_080094.3Re-query CCDS DB by Nucleotide ID:NM_025818Re-query CCDS DB by Protein ID:NP_080094Link to BLAST:NP_080094.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080094.3 615 Q8BZR9-1 615 100% 0 0

Chromosomal Locations for CCDS 24994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73047900 73048082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73049859 73049924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73053423 73053528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73064988 73065113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73065571 73065699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73066683 73066759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73067703 73067811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73069714 73069813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73070798 73070901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73073226 73073520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73075615 73075769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73077855 73078016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73078941 73079176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCGGCCGTCCGCGGCCTGCGAGTGTCTGTGAAGGCGGAGGCCCCCGCTGGGCCGGCTTTGGGGCTTC
CGTCGCCCGAGGTGGAGTCCGGTTTGGAGCGTGGCGAGCCGGAGCCCATGGAAGTGGAAGAAGGCGAGCT
GGAAATCGTGCCGGTGCGGCGCTCCCTAAAGGAACTGCTCCCGGACACAAGCAGAAGATATGAAAACAAG
GCTGGCAGCTTCATCACTGGGATCGATGTCACCTCCAAGGAAGCAATTGAAAAGAAAGAACAGCGAGCCA
AGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCCCAGAGAAATGTAGCCTTGGACCGAGACATGATGAA
GAAAGCAATTCCCAAGGTGAGACTGGAGACAATCTACATTTGTGGAGTGGATGAAATGAGCACCCAGGAT
ATCTTCTCCTATTTTAAGGAATATCCTCCAGCTCACATTGAGTGGTTGGATGACACCTCCTGCAATGTGG
TTTGGCTGGACGAGATGACGGCCACACGAGCTCTCATCAATATGAGTTCTCTGCCAGCCCAGGATAAGAT
GAGAAGCAGAGATGCCAGTGAAGACAAGTCGTCGGAGAAGAACAAGAAAGACAAGCAGGAAGACAGTTCA
GATGACGACGAGACTGAAGAAGGAGAAGTGGAAGATGAGAATTCAAGTGATGTAGAGTTGGACACGTTGT
CTCAGGTAGAAGAAGAGTCTCTGTTACGAAATGATCTTCGTCCAGCTAACAAACTTGCTAAAGGAAATAG
ACTATTCATGAGATTTGCTACAAAAGATGACAAAAAGGAACTTGGAGCAGCCAGAAGAAGTCAATACTAC
ATGAAGTATGGAAATCCAAATTATGGAGGCATGAAAGGAATTCTTAGCAATTCATGGAAGCGAAGATATC
ATTCCCGTCGCATTCAGCGGGATGTGATCAAGAAGAGAGCCCTGATTGGGGATGACGTTGGCTTGACGTC
GTATAAACACCGACATTCCGGATTAGTGAATGTTCCTGAGGAACCCATTGAGGAAGAGGAGGAGGAGGAG
GAGGAAGAGGAGGACCAGGACATGGATGCCGATGACAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAG
GTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGGCGATCCAGTGCGAGCAGCTCAGACTCAGATGAGAT
GGACTATGATCTGGAACTGAAGATGATTTCTACTCCCTCCCCAAAGAAAAGCATGAAAATGACCATGTAT
GCAGATGAAGTAGAGTCCCAACTGAAAAGTATTAGGAATCCCATGAGGGCAGATAGTATATCCACAAGCA
ATATAAAAAACCGAATTGGTAACAAATTGCCTCCTGAGAAATTTGCAGATGTCCGTCATCTCTTAGATGA
AAAGAGGCAGCATTCCTGTCCACGGCCAGCAGTCAGCAGTACTAAACCAGATATTCGCCAGCGGTTAGGA
AAAAGACCGTATTCTCCAGAGAAGGCTTTTAGTAGTAACCAGGTGGTTCGGAGAGAGCCCTCTTCAGATG
TACATAGTAGGCTAGGTGTTCCCAGGCAAGATGTTAAAGGCCTCTACTCTGATACTCGGGAGAGGAAATC
AGGTGGTTTGTGGACTCGCTTAGGATCTACACCCAAGACCAAAGAAAAGAACACGAAGAAAGTGGATCAC
AGGGCATCTGGTGCTGAGGAAGATGACTCGGAGCTTCAGAGAGCATGGGGTGCTCTGATCAAGGAGAAAG
AAGAGTCTCGCCAGAAGAAGAGTCGGCTGGATAGCTTGCCTTCGCTCCAGATTGAAGTCAGCCGGGAAAG
TAGCTCTGGTTCAGAGGCAGAGTCCTGA

Translation (615 aa):
MAAVRGLRVSVKAEAPAGPALGLPSPEVESGLERGEPEPMEVEEGELEIVPVRRSLKELLPDTSRRYENK
AGSFITGIDVTSKEAIEKKEQRAKRFHFRAEVNLAQRNVALDRDMMKKAIPKVRLETIYICGVDEMSTQD
IFSYFKEYPPAHIEWLDDTSCNVVWLDEMTATRALINMSSLPAQDKMRSRDASEDKSSEKNKKDKQEDSS
DDDETEEGEVEDENSSDVELDTLSQVEEESLLRNDLRPANKLAKGNRLFMRFATKDDKKELGAARRSQYY
MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEE
EEEEDQDMDADDRVVVEYHEELPGLKQPRERSLSRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMY
ADEVESQLKSIRNPMRADSISTSNIKNRIGNKLPPEKFADVRHLLDEKRQHSCPRPAVSSTKPDIRQRLG
KRPYSPEKAFSSNQVVRREPSSDVHSRLGVPRQDVKGLYSDTRERKSGGLWTRLGSTPKTKEKNTKKVDH
RASGAEEDDSELQRAWGALIKEKEESRQKKSRLDSLPSLQIEVSRESSSGSEAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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