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Report for CCDS24986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24986.1 Public Mus musculus 11 Mybbp1a 23 108 98 CCDS HistoryNCBI Gene:18432Re-query CCDS DB by CCDS ID:24986.1Re-query CCDS DB by GeneID:18432See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045633.5 ENSMUSP00000044827.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045633.5Link to Ensembl Protein Viewer:ENSMUSP00000044827.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045633Re-query CCDS DB by Protein ID:ENSMUSP00000044827
Original member Current member NCBI NM_016776.3 NP_058056.2 Accepted alive Link to Nucleotide Sequence:NM_016776.3Link to Protein Sequence:NP_058056.2Re-query CCDS DB by Nucleotide ID:NM_016776Re-query CCDS DB by Protein ID:NP_058056Link to BLAST:NP_058056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058056.2 1344 Q7TPV4 1344 100% 0 0

Chromosomal Locations for CCDS 24986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72441384 72441575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72441678 72441773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72442400 72442483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72442570 72442644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72442746 72442853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72443476 72443651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72443741 72443908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72444003 72444120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72444682 72444977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72445176 72445286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72445608 72445733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72445894 72446061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72446158 72446257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72446972 72447068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72447149 72447300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72447553 72447639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72447730 72447882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72447956 72448126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72448217 72448377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72448732 72448963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72449043 72449174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72449261 72449329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72449720 72449833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72449993 72450094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72450626 72450774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72450877 72451474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4035 nt):
ATGGCGGAGATGAAGAGCCCCACGAAAGCTGAGCCTGCGACTCCCGCAGAAGCGGCGCAAAGCGACCGCC
ACAGCCTGCTGGAGCACAGCCGCGAGTTCTTGGACTTCTTCTGGGACATTGCGAAACCGGATCAGGAAAC
GCGGCTCCGGGCCACGGAGAAGTTGTTGGAGTACTTGCGCACAAGGCCCAATGATTCGGAGATGAAATAT
GCCCTGAAGCGCCTAATCACTGGGCTTGGGGTGGGCCGAGAAGCCGCTAGGCCCTGCTACAGCCTGGCGC
TGGCACAGCTGTTGCAGTCTTTTGAAGACATCCCATTGTGTGACATCCTGGATCAGATACAAGAAAAATA
CAGCCTACAAGCCATGAACAAGGCAATGATGAGACCTAGTCTCTTTGCAAACCTTTTTGGAGTGCTAGCC
CTCTTTCAGTCAGGCCGCCTAGTGAAGGACAAAGAGGCCCTGATGAAGTCCGTGCAATTGCTGAAGATCC
TGTCCCAACACCCCAACCACTTACAGGGACAGCCAATAAAGGCTCTGGTGGACATCCTCTCTGAGGTCCC
AGAGTCCATGTTCCAGGAGATCCTGCCAAAGGTCCTCAAGGGTAACATGAAAGTGATCCTCCGCTCTCCC
AAGTACTTGGAGCTCTTCCTCCTGGCTAAGCAGAGGGTGCCGACAAAGCTCGAGTCACTCATGGGCTCGG
TTGACCTGTTCTCAGAAGACAATATTCCCAGTCTGGTGAACATCCTGAAGGTGGCCGCCAACTCTGTCAA
GAAGGAGCACAAGCTGCCTAATGTGGCTCTGGACCTGCTCCGCCTGGCGCTCAAGGAGAGCAGATTCGAA
CTGTTCTGGAAGAAGGTTTTGGAGGAGGGGCTGCTGAAGAATCCGTCCTGGACATCCAGCTACATGTGCT
TCCGCCTACTGGGTGCGTCTCTGCCGCTTCTGTCAGAGGAGCAGTTGCAGTTGGTGATGCGAGGAGACTT
GATCCGCCATTTTGGGGAGAACATGGTTATTTCTAAGCCCCAAAACCTATTTAAGATCATCCCAGAGATA
AGTACATACGTGGGTACCTTCCTAGAGGGGTGCCAGGATGACCCTAAGCGGCAGTTGACTATGATGGTGG
CCTTTACAACCATCACCAATCAAGGTCTCCCTGTCATGCCTACCTTCTGGCGTGTCACGCGGTTTTTGAA
TGCTGAAGCCCTGCAGAGCTATGTGGCCTGGTTGCGGGACATGTTCCTGCAGCCTGACCTGAACTCCTTG
GTTGACTTCAGCACTGCCAACCAGAAGAGAGCTCAGGACGCCTCGTTGAATGTGCCTGAGCGAGCTGTAT
TCCGGCTCCGGAAGTGGATCATCCACCGCCTGGTCAGCCTTGTGGATCATTTGCATCTGGAGAAGGATGA
AGCTGTGGTTGAGCAAATAGCCAGGTTTTGCTTGTTCCATGCCTTCTTTAAGACGAAGAAGGCTACGCCC
CAGATCCCAGAGACGAAGCAGCACTTCTCCTTCCCTTTGGACGACCGCAACCGTGGGGTCTTTGTCAGTG
CCTTCTTCAGCCTACTGCAGACGCTCAGTGTGAAGTTCAGGCAGACACCAGACCTGGCTGAAAATGGGAA
GCCTTGGACTTACCGCCTGGTTCAGTTGGCAGACATGCTGTTGAACCATAACCGCAATGTAACCAGTGTG
ACATCCTTGACAACACAGCAGCGTCAGGCCTGGGACCAGATGATGAGTACTCTGAAGGAATTAGAGGCCC
GCTCCTCTGAGACCAGGGCCATTGCCTTCCAGCACCTGCTGCTTCTGGTGGGCCTCCACATCTTCAAGTC
CCCTGCAGAAAGCTGTGATGTCCTAGGAGACATTCAGACTTGCATCAAGAAAAGCATGGAGCAGAATCCC
CGCCGATCACGCTCTAGAGCCAAAGCCTCCCAGGAGCCAGTATGGGTGGAGGTGATGGTGGAGATCTTGC
TGTCCTTGCTGGCTCAACCCAGCAACTTGATGCGCCAGGTGGTCCGGAGTGTATTTGGTCATATCTGTCC
CCACCTTACTCCACGTTGTCTGCAGCTAATCCTGGCTGTGCTCAGCCCTGTGACAAACGAGGATGAGGAT
GACAACGTGGTGGTCACTGATGACGCTGATGAGAAGCAGCTGCAGCATGGAGAGGACGAAGACTCAGATA
ATGAGGACAATAAGAACTCAGAGAGTGACATGGACAGTGAGGATGGGGAAGAAAGTGAAGAGGAGGACCG
TGACAAAGATGTGGACCCAGGCTTCCGTCAACAGTTGATGGAAGTGTTAAAAGCTGGGAATGCATTGGGT
GGAGTGGACAACGAGGAGGAGGAGGAGCTTGGGGATGAGGCCATGATGGCCCTGGACCAGAACCTGGCCA
GCCTATTTAAAGAGCAGAAGATGCGCATCCAGGCCCGGAATGAGGAGAAAAACAAGCTACAGAAGGAGAA
GAAGCTCCGACGGGACTTCCAAATCAGGGCACTAGACCTGATCGAGGTGCTGGTGACCAAGCAGCCTGAG
CACCCCCTGATCCTGGAACTACTTGAGCCACTGCTGAACGTGATCCAGCACAGCATGCGCAGCAAAGGCT
CCACCAAGCAGGAGCAGGACCTCCTGCACAAGACCGCCCGCATCTTCATGCACCACCTGTGTCGTGCCCG
CCGCTACTGCCACGAGGTGGGGCCGTGTGCAGAGGCTCTGCATGCCCAGGTGGAGAGGCTTGTGCAGCAG
GCTGGCAGCCAGGCTGATGCCTCTGTCGCCCTATACTATTTCAATGCCTCTCTGTACCTGCTGCGAGTCC
TCAAGGGCAACACCAATAAGAGGCACCAAGATGGTCATAAGTTACACGGAGCTGACACAGAGGACTCAGA
GGACCAGGCTGCTAACTGCTTAGACTTGGACTTTGTGACCCGGGTGTATTCAGCATCACTGGAATCTCTT
CTGACCAAGCGTAACAGCTCACTTACGGTCCCCATGTTCCTCAGCCTCTTCTCCAGATACCCAGTGATCT
GTAAGAACCTGCTTCCCGTCCTGGCTCAGCATGTGGCTGGCCCATCTCGGCCCCGCCATCAGGCCCAGGC
ATGCCTGATGCTCCAGAAGACTCTGTCTGCACGAGAGCTGAGAGTCTGTTTTGAGGATCCTGAGTGGGAG
CAGCTGATTACCCAACTCTTGGGAAAGGCCACCCAGACCCTGCAGACTCTTGGGGAGGCACAGAGCAAGG
GGGAGCACCAGAAGGAGCTATCCATCTTGGAGCTGCTGAACACTCTGTTGAGGACAGTCAATCACGAGAA
GCTGTCTGTGGACCTCACTGCTCCCTTGGGCGTGCTTCAGAGCAAGCAACAGAAGCTGCAGCAAAGCCTG
CAGCAGGGGAATCACTCATCTGGCTCCAATCGCCTCTATGATCTCTACTGGCAGGCCATGAGGATGCTAG
GAGTCCAACGTCCAAAGTCAGAAAAGAAGAATGCCAAGGATATTCCTAGTGACACCCAGAGCCCCGTCAG
CACAAAGCGGAAGAAAAAGGGATTCTTGCCAGAGACCAAGAAGCGAAAGAAACTTAAATCTGAGGGCACC
ACACCAGAAAAGAATGCTGCGTCACAGCAGGATGCAGTGACAGAGGGTGCCATGCCTGCTGCCACTGGTA
AAGACCAGCCCCCCAGCACAGGCAAGAAGAAAAGGAAGAGGGTAAAGGCCAGCACCCCATCCCAGGTGAA
TGGGATAACTGGGGCCAAGAGTCCAGCTCCCAGTAACCCCACCCTAAGCCCCAGCACCCCTGCCAAGACC
CCAAAACTGCAGAAGAAAAAAGAGAAGCTGTCACAGGTGAATGGAGCCACTCCTGTGTCCCCCATAGAGC
CTGAAAGCAAAAAGCATCATCAGGAGGCACTCAGCACAAAGGAGGTCATAAGAAAGTCCCCCCACCCCCA
GTCTGCCCTGCCAAAGAAAAGAGCAAGGCTGTCTCTGGTGAGCAGGAGCCCCAGCCTGTTACAGAGTGGG
GTCAAGAAAAGGAGAGTGGCCAGCAGGAGAGTGCAGACACCTTGA

Translation (1344 aa):
MAEMKSPTKAEPATPAEAAQSDRHSLLEHSREFLDFFWDIAKPDQETRLRATEKLLEYLRTRPNDSEMKY
ALKRLITGLGVGREAARPCYSLALAQLLQSFEDIPLCDILDQIQEKYSLQAMNKAMMRPSLFANLFGVLA
LFQSGRLVKDKEALMKSVQLLKILSQHPNHLQGQPIKALVDILSEVPESMFQEILPKVLKGNMKVILRSP
KYLELFLLAKQRVPTKLESLMGSVDLFSEDNIPSLVNILKVAANSVKKEHKLPNVALDLLRLALKESRFE
LFWKKVLEEGLLKNPSWTSSYMCFRLLGASLPLLSEEQLQLVMRGDLIRHFGENMVISKPQNLFKIIPEI
STYVGTFLEGCQDDPKRQLTMMVAFTTITNQGLPVMPTFWRVTRFLNAEALQSYVAWLRDMFLQPDLNSL
VDFSTANQKRAQDASLNVPERAVFRLRKWIIHRLVSLVDHLHLEKDEAVVEQIARFCLFHAFFKTKKATP
QIPETKQHFSFPLDDRNRGVFVSAFFSLLQTLSVKFRQTPDLAENGKPWTYRLVQLADMLLNHNRNVTSV
TSLTTQQRQAWDQMMSTLKELEARSSETRAIAFQHLLLLVGLHIFKSPAESCDVLGDIQTCIKKSMEQNP
RRSRSRAKASQEPVWVEVMVEILLSLLAQPSNLMRQVVRSVFGHICPHLTPRCLQLILAVLSPVTNEDED
DNVVVTDDADEKQLQHGEDEDSDNEDNKNSESDMDSEDGEESEEEDRDKDVDPGFRQQLMEVLKAGNALG
GVDNEEEEELGDEAMMALDQNLASLFKEQKMRIQARNEEKNKLQKEKKLRRDFQIRALDLIEVLVTKQPE
HPLILELLEPLLNVIQHSMRSKGSTKQEQDLLHKTARIFMHHLCRARRYCHEVGPCAEALHAQVERLVQQ
AGSQADASVALYYFNASLYLLRVLKGNTNKRHQDGHKLHGADTEDSEDQAANCLDLDFVTRVYSASLESL
LTKRNSSLTVPMFLSLFSRYPVICKNLLPVLAQHVAGPSRPRHQAQACLMLQKTLSARELRVCFEDPEWE
QLITQLLGKATQTLQTLGEAQSKGEHQKELSILELLNTLLRTVNHEKLSVDLTAPLGVLQSKQQKLQQSL
QQGNHSSGSNRLYDLYWQAMRMLGVQRPKSEKKNAKDIPSDTQSPVSTKRKKKGFLPETKKRKKLKSEGT
TPEKNAASQQDAVTEGAMPAATGKDQPPSTGKKKRKRVKASTPSQVNGITGAKSPAPSNPTLSPSTPAKT
PKLQKKKEKLSQVNGATPVSPIEPESKKHHQEALSTKEVIRKSPHPQSALPKKRARLSLVSRSPSLLQSG
VKKRRVASRRVQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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