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Report for CCDS24964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24964.1 Public Mus musculus 11 Inca1 23 108 98 CCDS HistoryNCBI Gene:103844Re-query CCDS DB by CCDS ID:24964.1Re-query CCDS DB by GeneID:103844See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073625.7 ENSMUSP00000073311.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073625.7Link to Ensembl Protein Viewer:ENSMUSP00000073311.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073625Re-query CCDS DB by Protein ID:ENSMUSP00000073311
Original member Current member EBI ENSMUST00000108541.8 ENSMUSP00000104181.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108541.8Link to Ensembl Protein Viewer:ENSMUSP00000104181.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108541Re-query CCDS DB by Protein ID:ENSMUSP00000104181
Original member Current member EBI ENSMUST00000108542.7 ENSMUSP00000104182.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108542.7Link to Ensembl Protein Viewer:ENSMUSP00000104182.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108542Re-query CCDS DB by Protein ID:ENSMUSP00000104182
Original member Current member EBI ENSMUST00000126114.8 ENSMUSP00000118761.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126114.8Link to Ensembl Protein Viewer:ENSMUSP00000118761.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000126114Re-query CCDS DB by Protein ID:ENSMUSP00000118761
Original member NCBI NM_001252482.1 NP_001239411.1 Updated not alive Link to Nucleotide Sequence:NM_001252482.1Link to Protein Sequence:NP_001239411.1Re-query CCDS DB by Nucleotide ID:NM_001252482Re-query CCDS DB by Protein ID:NP_001239411
Current member NCBI NM_001252482.2 NP_001239411.1 Accepted alive Link to Nucleotide Sequence:NM_001252482.2Link to Protein Sequence:NP_001239411.1Re-query CCDS DB by Nucleotide ID:NM_001252482Re-query CCDS DB by Protein ID:NP_001239411Link to BLAST:NP_001239411.1
Original member NCBI NM_001252483.1 NP_001239412.1 Updated not alive Link to Nucleotide Sequence:NM_001252483.1Link to Protein Sequence:NP_001239412.1Re-query CCDS DB by Nucleotide ID:NM_001252483Re-query CCDS DB by Protein ID:NP_001239412
Current member NCBI NM_001252483.2 NP_001239412.1 Accepted alive Link to Nucleotide Sequence:NM_001252483.2Link to Protein Sequence:NP_001239412.1Re-query CCDS DB by Nucleotide ID:NM_001252483Re-query CCDS DB by Protein ID:NP_001239412Link to BLAST:NP_001239412.1
Original member NCBI NM_001252484.1 NP_001239413.1 Updated not alive Link to Nucleotide Sequence:NM_001252484.1Link to Protein Sequence:NP_001239413.1Re-query CCDS DB by Nucleotide ID:NM_001252484Re-query CCDS DB by Protein ID:NP_001239413
Current member NCBI NM_001252484.2 NP_001239413.1 Accepted alive Link to Nucleotide Sequence:NM_001252484.2Link to Protein Sequence:NP_001239413.1Re-query CCDS DB by Nucleotide ID:NM_001252484Re-query CCDS DB by Protein ID:NP_001239413Link to BLAST:NP_001239413.1
Original member NCBI NM_213729.1 NP_998894.1 Updated not alive Link to Nucleotide Sequence:NM_213729.1Link to Protein Sequence:NP_998894.1Re-query CCDS DB by Nucleotide ID:NM_213729Re-query CCDS DB by Protein ID:NP_998894
Current member NCBI NM_213729.2 NP_998894.1 Accepted alive Link to Nucleotide Sequence:NM_213729.2Link to Protein Sequence:NP_998894.1Re-query CCDS DB by Nucleotide ID:NM_213729Re-query CCDS DB by Protein ID:NP_998894Link to BLAST:NP_998894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239411.1 231 Q6PKN7-1 231 100% 0 0
NP_001239412.1 231 Q6PKN7-1 231 100% 0 0
NP_001239413.1 231 Q6PKN7-1 231 100% 0 0
NP_998894.1 231 Q6PKN7-1 231 100% 0 0

Chromosomal Locations for CCDS 24964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70688606 70688749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70688985 70689144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70689746 70689939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70690183 70690222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70690439 70690552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70695864 70695907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGCAGGGTCAGGAAGATGGAGACAGCATCCTTCCTTTTGCCAAGTGTTCCAGAGTGGTCAGCCGATTTT
CACCCTGCAGCCTGCCTCCCCAGAATCGCAGACCAATGCCTCAGCCGTATGGAGATGCCTTCTGGGAGAA
TCTTAGCCAAAGGTCTAGCTCCAATTGGATGGTAGAACAGTACATTCCACCAATTCTGAGGGCCACTGAT
TGCTCCCGGCCTAGCCTGCACCCTCTTGAGGGGCTCCCTCCTCCTGAGAAGCTTTGGAGAAGAAAGAGAA
AGAAGCTGCATTTGGAAAGAATGCAGAAGGGACCTGGAAGCATTCCAGCCCGAGTTAGAGCAGTTACTTA
TCATCTGGAGGACCTGAGAAGGCGCCAGGGAATCATCAATGAACTGAAGAGGGCCCAGTGGGGCAGCTCT
GATGCTACACCTGAACTTCCAGCACTTGAAGAGGGCTTTGAACTCCTAAGCACTACAAAATACTTTGACG
TGGAAGAAGAGAGGGCAACCTATCCACAGAAAGAGACTTATTCTGTCACTCCCAGAGATCAGCTGCTTTG
GACTCCCTGGACTCCTGTAGGCCAGCAGGGGACTTATGCCTCTGGGCAGCTAAGCTCTTTGACCTACAGC
ACTGCTACAGCCAGAAAGAACCCCGTTTACGATCCCCAGGCGATGGAGTTGGAGTCTGAGGAGTAG

Translation (231 aa):
MQGQEDGDSILPFAKCSRVVSRFSPCSLPPQNRRPMPQPYGDAFWENLSQRSSSNWMVEQYIPPILRATD
CSRPSLHPLEGLPPPEKLWRRKRKKLHLERMQKGPGSIPARVRAVTYHLEDLRRRQGIINELKRAQWGSS
DATPELPALEEGFELLSTTKYFDVEEERATYPQKETYSVTPRDQLLWTPWTPVGQQGTYASGQLSSLTYS
TATARKNPVYDPQAMELESEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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