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Report for CCDS24882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24882.1 Public Mus musculus 11 Per1 23 108 98 CCDS HistoryNCBI Gene:18626Re-query CCDS DB by CCDS ID:24882.1Re-query CCDS DB by GeneID:18626See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021271.13 ENSMUSP00000021271.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021271.13Link to Ensembl Protein Viewer:ENSMUSP00000021271.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021271Re-query CCDS DB by Protein ID:ENSMUSP00000021271
Original member Current member EBI ENSMUST00000166748.7 ENSMUSP00000132635.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166748.7Link to Ensembl Protein Viewer:ENSMUSP00000132635.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166748Re-query CCDS DB by Protein ID:ENSMUSP00000132635
Original member Current member NCBI NM_001159367.2 NP_001152839.1 Accepted alive Link to Nucleotide Sequence:NM_001159367.2Link to Protein Sequence:NP_001152839.1Re-query CCDS DB by Nucleotide ID:NM_001159367Re-query CCDS DB by Protein ID:NP_001152839Link to BLAST:NP_001152839.1
Original member Current member NCBI NM_011065.5 NP_035195.2 Accepted alive Link to Nucleotide Sequence:NM_011065.5Link to Protein Sequence:NP_035195.2Re-query CCDS DB by Nucleotide ID:NM_011065Re-query CCDS DB by Protein ID:NP_035195Link to BLAST:NP_035195.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152839.1 1291 O35973 1291 100% 0 0
NP_035195.2 1291 O35973 1291 100% 0 0

Chromosomal Locations for CCDS 24882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69100642 69100916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69101005 69101103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69101196 69101350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69101451 69101572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69101675 69101876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69101987 69102038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69102164 69102306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69102674 69102752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69102825 69102931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69103104 69103257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69103353 69103461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69103549 69103680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69103842 69103947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69104031 69104202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69104291 69104421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69104634 69104813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69105390 69105623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69106453 69107069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69107533 69107719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69107861 69108050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69108361 69108511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69109081 69109359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3876 nt):
ATGAGTGGTCCCCTAGAAGGGGCCGATGGGGGAGGAGACCCCAGGCCCGGAGAACCTTTTTGTCCTGGAG
GAGTCCCATCCCCTGGGGCCCCGCAGCACCGGCCTTGTCCAGGCCCCAGCCTGGCTGATGACACTGATGC
AAACAGCAATGGCTCAAGTGGCAATGAGTCCAACGGACCCGAGTCCAGGGGCGCATCTCAGCGGAGTTCT
CATAGTTCCTCTTCTGGCAATGGCAAGGACTCAGCTCTGCTGGAGACCACTGAGAGCAGCAAGAGTACAA
ACTCACAGAGCCCATCCCCACCCAGCAGCTCCATTGCCTACAGCCTCCTGAGTGCGAGCTCAGAGCAGGA
CAACCCATCTACCAGTGGCTGCAGCAGTGAACAGTCAGCTCGAGCCAGGACCCAGAAAGAACTCATGACT
GCACTTCGGGAGCTCAAACTTCGACTGCCACCAGAGCGTCGGGGCAAGGGCCGCTCTGGGACCTTGGCCA
CACTGCAGTACGCTCTGGCCTGTGTCAAGCAGGTTCAGGCTAACCAGGAATATTACCAGCAGTGGAGTCT
GGAGGAGGGTGAGCCTTGTGCCATGGACATGTCTACTTACACCCTGGAGGAATTGGAGCATATCACATCC
GAATACACACTTCGAAACCAGGACACCTTCTCTGTGGCTGTGTCCTTCCTGACAGGCCGGATTGTCTATA
TTTCGGAGCAGGCAGGTGTCCTGCTGCGTTGCAAACGGGATGTGTTTCGGGGTGCCCGCTTCTCAGAGCT
CCTGGCTCCCCAGGATGTGGGTGTCTTCTATGGCTCTACTACACCATCTCGACTGCCCACCTGGGGCACT
GGCACCTCTGCAGGTTCAGGTCTCAAGGACTTCACCCAGGAAAAGTCTGTCTTCTGCCGAATCAGAGGAG
GTCCTGACCGGGATCCAGGGCCTCGGTACCAGCCATTCCGCCTAACCCCATATGTGACCAAGATTCGGGT
CTCAGATGGAGCCCCTGCACAGCCGTGCTGCCTACTCATTGCCGAGCGCATCCACTCTGGTTATGAAGCT
CCCCGGATCCCTCCTGACAAGAGGATCTTCACCACCCGACACACACCAAGCTGCCTCTTCCAGGATGTAG
ATGAAAGGGCTGCCCCACTGCTGGGTTACCTTCCCCAGGATCTCCTGGGGGCTCCAGTACTTCTCTTTCT
ACATCCTGAGGACCGACCCCTCATGCTGGCCATTCATAAGAAGATACTGCAGCTGGCAGGCCAGCCCTTT
GACCATTCCCCTATTCGCTTCTGTGCTCGGAACGGGGAATATGTCACCATGGACACCAGCTGGGCCGGTT
TTGTGCACCCCTGGAGCCGCAAGGTGGCTTTCGTGTTGGGTCGCCATAAAGTGCGCACGGCACCCCTGAA
TGAGGACGTCTTCACTCCCCCAGCCCCCAGCCCAGCTCCGTCCCTGGACTCTGATATCCAGGAGCTCTCA
GAGCAGATCCATCGATTGCTGCTGCAGCCTGTGCACAGCTCCAGCCCCACGGGGCTCTGTGGAGTTGGCC
CTCTGATGTCCCCTGGTCCTCTACACAGCCCTGGCTCCTCCAGTGATAGCAATGGGGGGGACGCTGAGGG
GCCTGGGCCTCCTGCTCCAGTGACTTTCCAGCAGATCTGTAAGGATGTGCATCTGGTAAAGCACCAGGGA
CAACAGCTCTTCATTGAATCTCGGGCCAAGCCCCCACCCCGGCCCCGCCTCCTTGCTACAGGTACATTCA
AAGCCAAAGTCCTTCCCTGCCAGTCCCCAAACCCCGAACTGGAGGTGGCCCCAGTTCCTGACCAAGCCTC
GTTAGCCTTGGCCCCTGAGGAGCCAGAGAGGAAAGAAACCTCTGGCTGTTCCTACCAGCAGATCAACTGC
CTGGACAGCATCCTCAGGTATTTGGAGAGCTGCAACATTCCCAGTACAACCAAGCGTAAATGTGCCTCCT
CCTCCTCCTACACTGCCTCTTCAGCCTCTGATGATGACAAGCAGAGGGCAGGTCCAGTTCCTGTGGGGGC
CAAGAAAGATCCGTCGTCAGCAATGCTGTCTGGGGAGGGGGCAACTCCTCGGAAGGAGCCAGTGGTGGGA
GGCACCCTGAGCCCGCTCGCCCTGGCCAATAAGGCAGAGAGCGTGGTGTCCGTCACCAGTCAGTGTAGCT
TCAGCTCCACCATCGTCCATGTGGGAGACAAGAAGCCCCCGGAGTCGGACATCATCATGATGGAAGACCT
GCCTGGCCTGGCCCCTGGCCCAGCCCCCAGTCCGGCCCCCAGCCCCACAGTAGCCCCTGACCCAACCCCA
GATGCTTATCGCCCAGTGGGTCTGACCAAGGCCGTGCTGTCCCTGCACACACAGAAGGAAGAGCAAGCCT
TCCTCAACCGCTTCAGAGATCTTGGCAGGCTTCGTGGACTTGACACCTCTTCTGTGGCCCCCTCAGCCCC
TGGCTGCCACCATGGCCCCATTCCCCCTGGTCGCCGACACCACTGCCGATCTAAAGCAAAGCGTTCCCGC
CACCACCACCACCAGACCCCCCGGCCCGAAACTCCCTGCTATGTCTCCCATCCTTCACCTGTGCCCTCTT
CTGGACCCTGGCCACCCCCACCAGCCACGACCCCCTTCCCAGCAATGGTCCAGCCCTACCCACTCCCAGT
ATTCTCCCCTCGAGGAGGACCCCAGCCCCTTCCCCCTGCCCCTACATCTGTGTCCCCTGCTACCTTCCCT
TCTCCCTTAGTGACCCCAATGGTGGCCTTGGTGCTCCCTAACTATCTATTCCCTACCCCACCTAGTTATC
CATATGGGGTGTCCCAGGCCCCTGTTGAGGGGCCACCCACGCCTGCTTCCCACTCGCCCTCTCCATCCCT
GCCCCCACCACCTCTCAGCCCCCCCCACCGCCCAGACTCCCCACTGTTCAACTCGAGATGCAGCTCCCCA
CTCCAGCTCAATCTGCTGCAGCTTGAGGAGTCCCCCCGCACGGAGGGGGGCGCTGCTGCAGGAGGCCCAG
GAAGCAGTGCTGGGCCCCTGCCTCCCAGTGAGGAGACTGCTGAGCCAGAGGCCAGATTGGTGGAGGTTAC
TGAGTCGTCCAATCAGGATGCACTTTCAGGCTCCAGCGACCTGCTGGAGCTACTGCTCCAAGAAGACTCT
CGCTCGGGCACAGGCTCCGCAGCCTCAGGCTCCCTGGGCTCTGGCCTGGGCTCTGGGTCTGGTTCAGGAT
CCCACGAAGGGGGAAGCACCTCAGCCAGCATCACCCGCAGCAGTCAGAGCAGCCATACAAGCAAGTACTT
TGGCAGCATCGACTCTTCCGAGGCTGAAGCTGGGGCTGCTCGGGCCAGGACTGAGCCTGGGGACCAGGTC
ATTAAGTGTGTGCTCCAGGACCCCATCTGGCTGCTCATGGCCAATGCCGACCAGCGTGTCATGATGACAT
ACCAGGTGCCGTCCAGGGATGCAGCCTCTGTGCTGAAGCAAGACCGGGAGAGGCTCCGGGCCATGCAGAA
ACAGCAGCCACGGTTCTCAGAGGACCAGAGGCGGGAACTGGGTGCTGTGCACTCCTGGGTCCGGAAGGGC
CAGCTGCCTCGGGCCCTTGATGTGACGGCGTGTGTGGACTGTGGCAGCAGCGTTCAAGATCCTGGCCACT
CTGATGACCCCCTCTTCTCAGAACTGGATGGATTGGGGCTGGAGCCCATGGAAGAGGGTGGAGGCGAGGG
TGGTGGGTGTGGTGTTGGCGGTGGTGGGGGTGATGGTGGTGAGGAGGCCCAGACCCAAATTGGGGCTAAG
GGTTCAAGCTCTCAGGACTCTGCCATGGAGGAAGAAGAGCAAGGTGGGGGCTCATCCAGCCCAGCTTTAC
CTGCAGAAGAAAACAGCACCAGCTAG

Translation (1291 aa):
MSGPLEGADGGGDPRPGEPFCPGGVPSPGAPQHRPCPGPSLADDTDANSNGSSGNESNGPESRGASQRSS
HSSSSGNGKDSALLETTESSKSTNSQSPSPPSSSIAYSLLSASSEQDNPSTSGCSSEQSARARTQKELMT
ALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQANQEYYQQWSLEEGEPCAMDMSTYTLEELEHITS
EYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGT
GTSAGSGLKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEA
PRIPPDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPF
DHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFTPPAPSPAPSLDSDIQELS
EQIHRLLLQPVHSSSPTGLCGVGPLMSPGPLHSPGSSSDSNGGDAEGPGPPAPVTFQQICKDVHLVKHQG
QQLFIESRAKPPPRPRLLATGTFKAKVLPCQSPNPELEVAPVPDQASLALAPEEPERKETSGCSYQQINC
LDSILRYLESCNIPSTTKRKCASSSSYTASSASDDDKQRAGPVPVGAKKDPSSAMLSGEGATPRKEPVVG
GTLSPLALANKAESVVSVTSQCSFSSTIVHVGDKKPPESDIIMMEDLPGLAPGPAPSPAPSPTVAPDPTP
DAYRPVGLTKAVLSLHTQKEEQAFLNRFRDLGRLRGLDTSSVAPSAPGCHHGPIPPGRRHHCRSKAKRSR
HHHHQTPRPETPCYVSHPSPVPSSGPWPPPPATTPFPAMVQPYPLPVFSPRGGPQPLPPAPTSVSPATFP
SPLVTPMVALVLPNYLFPTPPSYPYGVSQAPVEGPPTPASHSPSPSLPPPPLSPPHRPDSPLFNSRCSSP
LQLNLLQLEESPRTEGGAAAGGPGSSAGPLPPSEETAEPEARLVEVTESSNQDALSGSSDLLELLLQEDS
RSGTGSAASGSLGSGLGSGSGSGSHEGGSTSASITRSSQSSHTSKYFGSIDSSEAEAGAARARTEPGDQV
IKCVLQDPIWLLMANADQRVMMTYQVPSRDAASVLKQDRERLRAMQKQQPRFSEDQRRELGAVHSWVRKG
QLPRALDVTACVDCGSSVQDPGHSDDPLFSELDGLGLEPMEEGGGEGGGCGVGGGGGDGGEEAQTQIGAK
GSSSQDSAMEEEEQGGGSSSPALPAEENSTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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