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Report for CCDS24866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24866.1 Public Mus musculus 11 Pik3r6 23 108 98 CCDS HistoryNCBI Gene:104709Re-query CCDS DB by CCDS ID:24866.1Re-query CCDS DB by GeneID:104709See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24866.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102613.7 ENSMUSP00000099673.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102613.7Link to Ensembl Protein Viewer:ENSMUSP00000099673.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102613Re-query CCDS DB by Protein ID:ENSMUSP00000099673
Original member Current member NCBI NM_001004435.3 NP_001004435.1 Accepted alive Link to Nucleotide Sequence:NM_001004435.3Link to Protein Sequence:NP_001004435.1Re-query CCDS DB by Nucleotide ID:NM_001004435Re-query CCDS DB by Protein ID:NP_001004435Link to BLAST:NP_001004435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004435.1 752 Q3U6Q4-2 752 100% 0 0

Chromosomal Locations for CCDS 24866.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 68520275 68520287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68525600 68525683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68526331 68526422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68527077 68527145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68528451 68528583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68528756 68528825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68529892 68530075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68531422 68531584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68532494 68532580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68533466 68533880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68534193 68534271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68536104 68536226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68539899 68540009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68543598 68543685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68543977 68544047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68544720 68544810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68545797 68545915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68551224 68551336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68551891 68552044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGGAGAGCTCAGATGTGGAGCTGGACTTCCAGAGGAGTGTACAGGCTGTGCTGCGAGAGCTCAACACCC
CAAACCCAGCCCTCCAGAGCAATCAGGGCATGTGGAGATGGTCTCTGCACAAGAAGGTGGAGAGAAACCC
AGGAAAGAGCTCCATTCTGGTCCGAATTCTGCTCAGAGAGCTGGAGAAGGCAGAAAGCGAGGACGGACGC
CGTGTCATCATTCCCTTGCTGCTCACTCTAATGTCCGTGCTCACTAAGGCCACAGGCATCCCAGAAGATC
TGTACCATAGAGCTTATACCTTCTGCACCAGGCTACTGACCCTGCCGGCCCCCTACTCTACAGTCGCCTT
GGACTGCGCCATAAGACTGAAAACAGAGACGGCTGTCCCAGGTACGCTGTACCAGAGGACTGTCATCGCT
GAGCAGAATCTGATAAGTGAACTATACCCTTACCAGGAGAGGGTGTTTCTGTTCGTGGACCCTGAGCTGG
TTTCTGCCTCCGTGTGCAGTGCCCTGCTGCTGGAGATCCAGGCGGCCCAAGAGCAGCAGACACCGGAGGC
CTGCATGCGCCACGTGGTCTCCCACGCCTTGCAGGCAGCTCTGGGAGAAGCCTGCCACACAGGTGCTCTG
AACAGGAAGCTGCAGGCCAGCTCCCGACGCGTCCTGGAATACTATTTCCACGCCGTTGTGGCTGCCATAG
AGCAGGTGGCTAGCGAGGACAGCCCCAGCCGGCTGGGACACCTGGAGAAGATGGAGGAGATTTACTGCTC
GCTGCTAGGGCCTGCGACCACAAGAAGGCACTGTGTCGGTGACCTTCTGCAAGACCGCCTGCCAAGCATC
CCCCTGCCCAGCCCCTACATCACCTTCCACCTCTGGACCGACCAGGAGCAGCTCTGGAAGGAACTGGTAC
TCTTCCTCCGCCCACGCTCGCAGCTGCGCCTCAGTGCTGATCTGGATGCCTTGGATCTACAAGGATTTAG
GCTAGACCGGGACTTGGCCCGGGTGTCCACCGACAGTGGAATTGAGCGGGACCTCCCTTTGGGGAGCGAT
GAGCTTCCGGACCCCAGCAGCTCTGAGATGGAGCGGGCCGCCCTTCAACGCAAGGGGGGCATCAAGAAGC
GTGTGTGGCCCCCTGACTTCTTCATGCCTGGCAGCTGGGATGGGCCCCCGGGGTTGCATCGGAGGACTGG
CAGGCCTAGTGGGGACGGGGAGCTGCTACCTGGAGTCTCTCGGGTGCATACCGCCCGCGTGCTCGTTCTG
GGGGATGACAGGATGCTAGGGCGCTTGGCCCAGGCTTACTACAGACTCAGGAAACGGGAGACCAAGAAGT
TCTGCCTCACTCCTAGACTCAGCCTACAGCTCTACTATATCCCTGTGCTGGCGCCTCAGGATCCAGAAGC
ATCCAGGAAGCCTGAGCTGGGAGAGCTGGCTTCCTTCCTGGGTCGAGTCGACCCATGGTATGAAAGCACT
GTCAACACCCTGTGTCCTGCCATCCTCAAGCTGGCCGAGATGCCTCCCTACTTGGACACATCTAGGACCG
TGGACCCCTTCATCCTGGATGTCATCACTTACTATGTCCGCATGGGCACTCAGCCCATCTATTTCCAGCT
CTACAAGGTTAAGATCTTCACCAGCTTGAGTCACGACCCTACAGAGGACATTTTCCTCACAGAGCTGAAG
GTGAAGATCCAAGACTCCAAGTCCCCCAAAGAGGGCTCTTCACCTCGAAGGAGAGGGGCAGCTGAGGGCA
CAGGAGCTGAGCTGTCCATGTGCTACCAGAAGGCCCTGCTCAGCCACAGACCACGAGAGGTCACTGTTTC
TCTGCGGGCCACCGGGCTGGTCCTGAAGGCCATTCCAGCTGGTGACACTGAAGTTTCAGGGTTCTTCCAC
TGTACCTCACCAAATGCTGCTTCTGCCACAGACTGTTCCTGTCTGCACGTCAGTGTGACAGAGGTGGTCA
AGTCCTCCAATCTGGCAGGAAGGTCATTTACGACATCAACCAACACCTTCCGGACATCCAGTATCCAAGT
CCAGAGCCAAGACCAGAGGCTGCTCACACTATGGCTGGACAAGGACGGACGGCGGACTTTCAGGGATGTG
GTCAGATTTGAGGTCAGTCCCTGCCCAGAGCCATGTTCACGGACCCAGAAATCCAAGACGTCAGCGCTCA
ATTCGCACGGGCAGGAGACAGAGAAGAACATGGCCAAGCCCAATTCTCTTCTGATGCCCATCAACACATT
CTCTGGCATCATCCAATAA

Translation (752 aa):
MESSDVELDFQRSVQAVLRELNTPNPALQSNQGMWRWSLHKKVERNPGKSSILVRILLRELEKAESEDGR
RVIIPLLLTLMSVLTKATGIPEDLYHRAYTFCTRLLTLPAPYSTVALDCAIRLKTETAVPGTLYQRTVIA
EQNLISELYPYQERVFLFVDPELVSASVCSALLLEIQAAQEQQTPEACMRHVVSHALQAALGEACHTGAL
NRKLQASSRRVLEYYFHAVVAAIEQVASEDSPSRLGHLEKMEEIYCSLLGPATTRRHCVGDLLQDRLPSI
PLPSPYITFHLWTDQEQLWKELVLFLRPRSQLRLSADLDALDLQGFRLDRDLARVSTDSGIERDLPLGSD
ELPDPSSSEMERAALQRKGGIKKRVWPPDFFMPGSWDGPPGLHRRTGRPSGDGELLPGVSRVHTARVLVL
GDDRMLGRLAQAYYRLRKRETKKFCLTPRLSLQLYYIPVLAPQDPEASRKPELGELASFLGRVDPWYEST
VNTLCPAILKLAEMPPYLDTSRTVDPFILDVITYYVRMGTQPIYFQLYKVKIFTSLSHDPTEDIFLTELK
VKIQDSKSPKEGSSPRRRGAAEGTGAELSMCYQKALLSHRPREVTVSLRATGLVLKAIPAGDTEVSGFFH
CTSPNAASATDCSCLHVSVTEVVKSSNLAGRSFTTSTNTFRTSSIQVQSQDQRLLTLWLDKDGRRTFRDV
VRFEVSPCPEPCSRTQKSKTSALNSHGQETEKNMAKPNSLLMPINTFSGIIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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