NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24752.1 Public Mus musculus 11 Zfp39 23 108 98 CCDS HistoryNCBI Gene:22698Re-query CCDS DB by CCDS ID:24752.1Re-query CCDS DB by GeneID:22698See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102703.1 ENSMUSP00000099764.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102703.1Link to Ensembl Protein Viewer:ENSMUSP00000099764.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102703Re-query CCDS DB by Protein ID:ENSMUSP00000099764
Original member Current member NCBI NM_011758.2 NP_035888.2 Accepted alive Link to Nucleotide Sequence:NM_011758.2Link to Protein Sequence:NP_035888.2Re-query CCDS DB by Nucleotide ID:NM_011758Re-query CCDS DB by Protein ID:NP_035888Link to BLAST:NP_035888.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035888.2 718 Q02525 718 100% 0 0

Chromosomal Locations for CCDS 24752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58889778 58891546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58892962 58893054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58900565 58900691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58902743 58902907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58904115 58904117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGAGGAACTTGCAGCCTGACAGTGTGGAGAACTCCTTGAGTCAACTCCCCAGTCGATGTCTTGAAACTA
GAAAGCGTAAGAGAAGCTACAAGAAGAGGCCAGTCACCTACAGTTACTGGAGACGGACCCAGCGGAATAG
AGCAAGAAAACACAAGGCACCAGTAAAGGGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGG
GATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCA
GCCTGGAGTCCTTGGGCCACTGCATTACCAAACCTGAGGTGATCTTTAAGCTGGAGCAAGGAGCTGAGCC
ATGGAGAGCAGAAGACGTCCCAAAGCAGAGCCGAGCAGATGTACAGAAGATAACGGAACTGAACGAAACC
AGCCAGGACAATGAAGAGAGACATCTGTGGCACCATGCAATTACCTACAGCAACAAGTCAACCGAGGAGA
AAGTTAAATTAGGAAACATAGTTAATGTGAGCTCAAACTGTGTTTCAAATCTGACTGTAAAGAATGGAAA
CTCCTCAGGAATGAGGCCTGTGGCACTTACTGTGTGGCAGAGTGTCCTTCCCCCTAACAAGCCCGATGAC
ACGAGGATTGGAGAGGAACTTGATGCCTCTCTAACTAGTGAGCCCCCCATACACGCAGAGCATCCTGGGT
TGTATAGCAGAGCTCCAGGCACTGGACAGCAGTTTCAGTGTTGTATGCAAGAAGTGACCTGCAACACAAA
GGCATTATGGACTAAGAGGTTTCACATTGCACATGGGTCCAGTAAGTTTGGCGAGTCCGAGAAAGTGCCT
GATGAGGTAGCTCTTCATGCCCAAGACGTGAGCTGGGTACGGGCAGAAACTTTTGAATGTAGTATTTGTA
AGAAAACATTCTGTACAAAATGTGAGCTCATGAAACACAAGAAAATACACAAAGGACAGCAATATTACAC
GTGTAGGGATTGTGAGAAAACCTTCATTAAGGAATCATACCACACAGACCAGAGGGTACATGCAGGAGTC
GGGTCCCATAGATGTAAACAATGTGAGAAATGTTTTCACCAGAAGAACCAGCAAAATGTGCACGAAAGAG
TCCCCAGAGAAGCCCGACTCTGGGAAGTTTATCAGTCTGAAAACAGCTTTGGCGAGAAGCCAAATCTCAG
GCGCTATCAGAGGACCCGTGCCGGTTATAAGCCCTATGGATGTAACCTGTGTGGGAAGGCATTTTACCGC
AAGTCACACCTTGGCAGGCACCAGAAAATTCACACGGGTGAGAAACCCTATGGTTGTGAAGAGTGTAAGA
AAACTTTCTACCATAAGTCCTCCCTCACCATACATCAGAGGACTCACACAGGTGAGAAGCCCTACGAGTG
TAAAAAATGCAGGAAAACTTTCTACTGTAAGTCGGACCTGAATGTCCACCATAGAACTCACACTGGCGAG
AAGCCGTACGAGTGTGACGAATGTAGGAAAACGTTCTACTCTAAGTCACACCTTGTGATACATCAGAAAG
TTCACACAGGCGACAAGCCATACGAATGTGAAGAGTGTCAGAAAGCCTTCAGCCGTAAGTCAAACCTTAC
CGTACATCAGAAAACACATACAGGGGAGAAACCTTACGAGTGCAATGTATGTGGGAAAACTTTTCACCGG
CAGTCACACCTCAACATGCACCAGGGGACTCACACTGGCCAGAAACCCTACCAATGCGAAGAGTGTGGGA
AAGCGTTCTACCAGAAGTCAAGCCTCAGAAGACATCAGAGAAACCACACGGGGAGCAGACCATATGCATG
TGAAGAATGTAGGAAAACCTTCCTCCATAAGTCCTCCCTCACTGTCCATCAGAGAAGCCACACAGGCTAC
AAGCCATACTCGTGTGAGGAGTGCAGGAAAACGTTTTACAGTAAGTCACATCTCACCGTCCATCAGAGAA
CCCACACAGGCGAGAAGCCCTATGAGTGTAAGCTATGCAAGAAGGCTTTTCACCAGAAGTCATACCTTAA
CCGGCATCAGGTAACTCACGGAAGTGAGAAACGATTTGAATGTCAAGAATGTAGGAAAACGTTTTATCAC
AAGTCTTCCCTCACTGTACATCAGAGAATCCACCTGAGGGAGCTCCTGTGCGTCTGA

Translation (718 aa):
MRNLQPDSVENSLSQLPSRCLETRKRKRSYKKRPVTYSYWRRTQRNRARKHKAPVKGLVSFEDVSVDFTW
DEWQDLDDSQRKLYRDVMLETYSSLESLGHCITKPEVIFKLEQGAEPWRAEDVPKQSRADVQKITELNET
SQDNEERHLWHHAITYSNKSTEEKVKLGNIVNVSSNCVSNLTVKNGNSSGMRPVALTVWQSVLPPNKPDD
TRIGEELDASLTSEPPIHAEHPGLYSRAPGTGQQFQCCMQEVTCNTKALWTKRFHIAHGSSKFGESEKVP
DEVALHAQDVSWVRAETFECSICKKTFCTKCELMKHKKIHKGQQYYTCRDCEKTFIKESYHTDQRVHAGV
GSHRCKQCEKCFHQKNQQNVHERVPREARLWEVYQSENSFGEKPNLRRYQRTRAGYKPYGCNLCGKAFYR
KSHLGRHQKIHTGEKPYGCEECKKTFYHKSSLTIHQRTHTGEKPYECKKCRKTFYCKSDLNVHHRTHTGE
KPYECDECRKTFYSKSHLVIHQKVHTGDKPYECEECQKAFSRKSNLTVHQKTHTGEKPYECNVCGKTFHR
QSHLNMHQGTHTGQKPYQCEECGKAFYQKSSLRRHQRNHTGSRPYACEECRKTFLHKSSLTVHQRSHTGY
KPYSCEECRKTFYSKSHLTVHQRTHTGEKPYECKLCKKAFHQKSYLNRHQVTHGSEKRFECQECRKTFYH
KSSLTVHQRIHLRELLCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH