NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24703.1 Public Mus musculus 11 Gpx3 23 108 98 CCDS HistoryNCBI Gene:14778Re-query CCDS DB by CCDS ID:24703.1Re-query CCDS DB by GeneID:14778See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Contains selenocysteine

Sequence IDs included in CCDS 24703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082430.9 ENSMUSP00000081011.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082430.9Link to Ensembl Protein Viewer:ENSMUSP00000081011.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000082430Re-query CCDS DB by Protein ID:ENSMUSP00000081011
Original member Current member NCBI NM_008161.4 NP_032187.2 Accepted alive Link to Nucleotide Sequence:NM_008161.4Link to Protein Sequence:NP_032187.2Re-query CCDS DB by Nucleotide ID:NM_008161Re-query CCDS DB by Protein ID:NP_032187Link to BLAST:NP_032187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032187.2 226 P46412 226 100% 0 0

Chromosomal Locations for CCDS 24703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54902966 54903052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54907127 54907280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54908541 54908658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54909040 54909139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54909437 54909658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 73

Nucleotide Sequence (681 nt):
ATGGCCCGGATCCTCCGGGCATCCTGCCTTCTGTCCCTGCTCCTGGCCGGGTTTGTTCCGCCGGGCCGGG
GACAAGAGAAGTCTAAGACAGACTGCCATGGCGGTATGAGTGGTACCATCTACGAGTATGGAGCCCTCAC
CATCGATGGGGAGGAATACATTCCTTTTAAGCAGTATGCAGGCAAATATATCCTCTTTGTCAACGTAGCC
AGCTACTGAGGTCTGACAGACCAATACCTTGAACTGAATGCACTACAAGAAGAACTTGGGCCATTTGGCT
TGGTCATTCTGGGCTTCCCTTCCAACCAATTTGGCAAACAGGAGCCAGGCGAGAACTCGGAGATACTCCC
CAGTCTCAAGTATGTTCGACCAGGTGGGGGCTTTGTGCCTAATTTCCAGCTCTTTGAGAAAGGAGATGTG
AACGGGGAGAAAGAGCAGAAATTCTACACTTTCCTGAAGAACTCCTGCCCTCCCACTGCAGAACTCCTGG
GCTCACCTGGCCGCCTCTTTTGGGAACCCATGAAGATCCATGACATCCGCTGGAACTTTGAGAAGTTCCT
GGTGGGGCCAGATGGCATACCGGTTATGCGCTGGTACCACCGGACCACAGTCAGCAACGTCAAGATGGAC
ATCCTGTCTTACATGAGGCGGCAGGCAGCCCTGAGCGCCAGGGGGAAGTAA

Translation (226 aa):
MARILRASCLLSLLLAGFVPPGRGQEKSKTDCHGGMSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVA
SYUGLTDQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDV
NGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMD
ILSYMRRQAALSARGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH