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Report for CCDS24689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24689.1 Public Mus musculus 11 Slc22a4 23 108 98 CCDS HistoryNCBI Gene:30805Re-query CCDS DB by CCDS ID:24689.1Re-query CCDS DB by GeneID:30805See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020586.6 ENSMUSP00000020586.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020586.6Link to Ensembl Protein Viewer:ENSMUSP00000020586.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020586Re-query CCDS DB by Protein ID:ENSMUSP00000020586
Original member Current member NCBI NM_019687.4 NP_062661.1 Accepted alive Link to Nucleotide Sequence:NM_019687.4Link to Protein Sequence:NP_062661.1Re-query CCDS DB by Nucleotide ID:NM_019687Re-query CCDS DB by Protein ID:NP_062661Link to BLAST:NP_062661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062661.1 553 Q9Z306 553 100% 0 0

Chromosomal Locations for CCDS 24689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53983610 53983685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53986478 53986613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53988782 53988964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53990624 53990838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53991985 53992085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53995964 53996090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53997377 53997548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54005394 54005548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54007768 54007871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54027584 54027976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCGGGACTACGACGAGGTGATCGCCTTCCTGGGCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTTC
TGCTCAGCGCCAGCATCATCCCCAATGGCTTCAATGGTATGTCAGTCGTGTTCCTGGCGGGGACCCCCGA
GCACCGTTGCCTGGTTCCTGACACTGTGAACCTGAGCAGCTCCTGGCGCAACCACAGCATCCCCTTGGAG
ACGAAGGACGGACGACAGGTGCCTCAGAGCTGCCGCCGCTACCGACTGGCCACCATCGCCAACTTCTCTG
CGATGGGGCTGGAGCCAGGACAGGACGTGGATCTGGAGCAGCTGGAGCAGGAGAGCTGCCTGGATGGCTG
GGAGTACGACAAGGACATCTTCCTGTCCACCATCGTGACAGAGTGGAATCTGGTGTGTGAGGATGACTGG
AAGACACCCCTCACCACCTCCCTGTTCTTCGTAGGCGTTCTCTGCGGCTCCTTCGTGTCTGGGCAGCTGT
CAGACAGGTTTGGCAGGAAGAAAGTCCTCTTTGCAACCATGGCTGTGCAGACTGGATTCAGCTTCGTGCA
GATTTTCTCAACCAACTGGGAGATGTTCACTGTGTTGTTTGCCATTGTGGGCATGGGCCAGATCTCCAAC
TACGTGGTGGCCTTCATACTAGGAACTGAAATCCTGAGCAAGTCGGTTCGCATCATCTTCTCCACATTAG
GAGTCTGTACATTTTTTGCAATCGGCTACATGGTCCTGCCGCTGTTTGCATACTTCATCAGAGACTGGAG
GATGCTGCTGCTGGCCCTGACACTGCCTGGCCTGTTCTGTGTTCCCCTGTGGTGGTTTATTCCAGAATCT
CCCCGGTGGCTGATATCCCAGAGGAGATTTGCAGAGGCCGAACAGATCATCCAGAAAGCCGCAAAGATGA
ACAGCATCGTGGCGCCAGCAGGGATATTCGATCCTCTAGAGCTACAGGAGCTAAACTCCTTGAAGCAGCA
GAAAGTCATAATCCTGGACCTGTTCAGGACTCGGAACATTGCCACCATAACCGTGATGGCTGTGATGCTG
TGGATGCTAACCTCAGTGGGTTACTTTGCTCTGTCTCTCAATGTTCCTAATTTACATGGAGATGTCTACC
TGAACTGCTTCCTCTCTGGCCTGATTGAAGTTCCAGCTTACTTCACAGCCTGGCTGCTACTGCGAACCCT
GCCACGGAGATATATTATAGCTGGGGTGCTATTCTGGGGAGGAGGTGTGCTTCTCTTGATCCAAGTGGTA
CCTGAAGATTATAACTTTGTGTCCATTGGACTGGTGATGCTGGGGAAATTTGGGATCACCTCTGCCTTCT
CCATGTTGTATGTCTTCACTGCGGAGCTCTACCCAACCCTGGTCAGGAACATGGCTGTGGGCATCACCTC
CATGGCCTCTCGGGTGGGCAGCATCATTGCCCCCTATTTCGTTTACCTGGGCGCCTATAACAGACTCCTA
CCCTACATCCTCATGGGCAGTCTGACTGTCCTCATTGGAATCATCACGCTTTTTTTCCCTGAAAGTTTTG
GAGTGACTCTACCAGAGAACTTGGAGCAGATGCAGAAAGTGAGAGGGTTCAGATGTGGGAAAAAATCAAC
AGTCTCAGTGGACAGAGAAGAAAGCCCCAAGGTTCTAATAACTGCATTCTAA

Translation (553 aa):
MRDYDEVIAFLGEWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHRCLVPDTVNLSSSWRNHSIPLE
TKDGRQVPQSCRRYRLATIANFSAMGLEPGQDVDLEQLEQESCLDGWEYDKDIFLSTIVTEWNLVCEDDW
KTPLTTSLFFVGVLCGSFVSGQLSDRFGRKKVLFATMAVQTGFSFVQIFSTNWEMFTVLFAIVGMGQISN
YVVAFILGTEILSKSVRIIFSTLGVCTFFAIGYMVLPLFAYFIRDWRMLLLALTLPGLFCVPLWWFIPES
PRWLISQRRFAEAEQIIQKAAKMNSIVAPAGIFDPLELQELNSLKQQKVIILDLFRTRNIATITVMAVML
WMLTSVGYFALSLNVPNLHGDVYLNCFLSGLIEVPAYFTAWLLLRTLPRRYIIAGVLFWGGGVLLLIQVV
PEDYNFVSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGITSMASRVGSIIAPYFVYLGAYNRLL
PYILMGSLTVLIGIITLFFPESFGVTLPENLEQMQKVRGFRCGKKSTVSVDREESPKVLITAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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