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Report for CCDS24679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24679.1 Public Mus musculus 11 Gdf9 23 108 98 CCDS HistoryNCBI Gene:14566Re-query CCDS DB by CCDS ID:24679.1Re-query CCDS DB by GeneID:14566See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018382.6 ENSMUSP00000018382.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018382.6Link to Ensembl Protein Viewer:ENSMUSP00000018382.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018382Re-query CCDS DB by Protein ID:ENSMUSP00000018382
Original member Current member NCBI NM_008110.2 NP_032136.2 Accepted alive Link to Nucleotide Sequence:NM_008110.2Link to Protein Sequence:NP_032136.2Re-query CCDS DB by Nucleotide ID:NM_008110Re-query CCDS DB by Protein ID:NP_032136Link to BLAST:NP_032136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032136.2 441 Q07105 441 100% 0 0

Chromosomal Locations for CCDS 24679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53433406 53433802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53436616 53437544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGCACTTCCCAGCAACTTCCTGTTGGGGGTTTGCTGCTTTGCCTGGCTGTGTTTTCTTAGTAGCCTTA
GCTCTCAGGCTTCTACTGAAGAATCCCAGAGTGGAGCCAGTGAAAATGTGGAGTCTGAGGCAGACCCCTG
GTCCTTGCTGCTGCCTGTAGATGGGACTGACAGGTCTGGCCTCTTGCCCCCCCTCTTTAAGGTTCTATCT
GATAGGCGAGGTGAGACCCCTAAGCTGCAGCCTGACTCCAGAGCACTCTACTACATGAAAAAGCTCTATA
AGACGTATGCTACCAAAGAGGGGGTTCCCAAACCCAGCAGAAGTCACCTCTACAATACCGTCCGGCTCTT
CAGTCCCTGTGCCCAGCAAGAGCAGGCACCCAGCAACCAGGTGACAGGACCGCTGCCGATGGTGGACCTG
CTGTTTAACCTGGACCGGGTGACTGCCATGGAACACTTGCTCAAATCGGTCTTGCTATACACTCTGAACA
ACTCTGCCTCTTCCTCCTCCACTGTGACCTGTATGTGTGACCTTGTGGTAAAGGAGGCCATGTCTTCTGG
CAGGGCACCCCCAAGAGCACCGTACTCATTCACCCTGAAGAAACACAGATGGATTGAGATTGATGTGACC
TCCCTCCTTCAGCCCCTAGTGACCTCCAGCGAGAGGAGCATTCACCTGTCTGTCAATTTTACATGCACAA
AAGACCAGGTGCCAGAGGACGGAGTGTTTAGCATGCCTCTCTCAGTGCCTCCTTCCCTCATCTTGTATCT
CAACGACACAAGCACCCAGGCCTACCACTCTTGGCAGTCTCTTCAGTCCACCTGGAGGCCTTTACAGCAT
CCCGGCCAGGCCGGTGTGGCTGCCCGTCCCGTGAAAGAGGAAGCTATTGAGGTGGAAAGATCTCCCCGGC
GCCGTCGAGGGCAGAAAGCCATCCGCTCCGAAGCGAAGGGGCCACTTCTTACAGCATCCTTCAACCTCAG
CGAATACTTCAAACAGTTTCTTTTCCCCCAAAACGAGTGTGAACTCCATGACTTCAGACTGAGTTTTAGT
CAGCTCAAATGGGACAACTGGATCGTGGCCCCGCACAGGTACAACCCTAGGTACTGTAAAGGGGACTGTC
CTAGGGCGGTCAGGCATCGGTACGGCTCTCCTGTGCACACCATGGTCCAGAATATAATCTATGAGAAGCT
GGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGACCATTGAA
CCCGACGGCTCCATCGCTTACAAAGAGTACGAAGACATGATAGCTACGAGGTGCACCTGTCGTTAG

Translation (441 aa):
MALPSNFLLGVCCFAWLCFLSSLSSQASTEESQSGASENVESEADPWSLLLPVDGTDRSGLLPPLFKVLS
DRRGETPKLQPDSRALYYMKKLYKTYATKEGVPKPSRSHLYNTVRLFSPCAQQEQAPSNQVTGPLPMVDL
LFNLDRVTAMEHLLKSVLLYTLNNSASSSSTVTCMCDLVVKEAMSSGRAPPRAPYSFTLKKHRWIEIDVT
SLLQPLVTSSERSIHLSVNFTCTKDQVPEDGVFSMPLSVPPSLILYLNDTSTQAYHSWQSLQSTWRPLQH
PGQAGVAARPVKEEAIEVERSPRRRRGQKAIRSEAKGPLLTASFNLSEYFKQFLFPQNECELHDFRLSFS
QLKWDNWIVAPHRYNPRYCKGDCPRAVRHRYGSPVHTMVQNIIYEKLDPSVPRPSCVPGKYSPLSVLTIE
PDGSIAYKEYEDMIATRCTCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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